How To Install lumpy-sv-examples on Debian 12
Introduction
In this tutorial we learn how to install lumpy-sv-examples on Debian 12.
What is lumpy-sv-examples
lumpy-sv-examples is:
LUMPY, a novel SV discovery framework that naturally integrates multiple SV signals jointly across multiple samples. LUMPY yields improved sensitivity, especially when SV signal is reduced owing to either low coverage data or low intra-sample variant allele frequency.
This package contains some example data and scripts to test lumpy-sv.
There are three methods to install lumpy-sv-examples on Debian 12. We can use apt-get, apt and aptitude. In the following sections we will describe each method. You can choose one of them.
Install lumpy-sv-examples Using apt-get
Update apt database with apt-get using the following command.
sudo apt-get update
After updating apt database, We can install lumpy-sv-examples using apt-get by running the following command:
sudo apt-get -y install lumpy-sv-examples
Install lumpy-sv-examples Using apt
Update apt database with apt using the following command.
sudo apt update
After updating apt database, We can install lumpy-sv-examples using apt by running the following command:
sudo apt -y install lumpy-sv-examples
Install lumpy-sv-examples Using aptitude
If you want to follow this method, you might need to install aptitude first since aptitude is usually not installed by default on Debian. Update apt database with aptitude using the following command.
sudo aptitude update
After updating apt database, We can install lumpy-sv-examples using aptitude by running the following command:
sudo aptitude -y install lumpy-sv-examples
How To Uninstall lumpy-sv-examples on Debian 12
To uninstall only the lumpy-sv-examples package we can use the following command:
sudo apt-get remove lumpy-sv-examples
Uninstall lumpy-sv-examples And Its Dependencies
To uninstall lumpy-sv-examples and its dependencies that are no longer needed by Debian 12, we can use the command below:
sudo apt-get -y autoremove lumpy-sv-examples
Remove lumpy-sv-examples Configurations and Data
To remove lumpy-sv-examples configuration and data from Debian 12 we can use the following command:
sudo apt-get -y purge lumpy-sv-examples
Remove lumpy-sv-examples configuration, data, and all of its dependencies
We can use the following command to remove lumpy-sv-examples configurations, data and all of its dependencies, we can use the following command:
sudo apt-get -y autoremove --purge lumpy-sv-examples
Dependencies
lumpy-sv-examples have the following dependencies:
References
Summary
In this tutorial we learn how to install lumpy-sv-examples package on Debian 12 using different package management tools: apt, apt-get and aptitude.