How To Install librostlab3 on Debian 9

In this tutorial we learn how to install librostlab3 on Debian 9. librostlab3 is C++ library for computational biology

Introduction

In this tutorial we learn how to install librostlab3 on Debian 9.

What is librostlab3

librostlab3 is:

This library was developed by the Rost Lab. The lab’s research is driven by a conviction that protein and DNA sequences encode a significant core of information about the ultimate structure and function of genetic material and its gene products.

The library provides the following facilities:

  • current working directory resource
  • exception with stack backtrace
  • file lock resource
  • passwd and group structures for C++
  • effective uid and gid resource
  • rostlab::bio::seq class with stream input operator for FASTA format
  • umask resource

This package contains the shared library.

There are three methods to install librostlab3 on Debian 9. We can use apt-get, apt and aptitude. In the following sections we will describe each method. You can choose one of them.

Install librostlab3 Using apt-get

Update apt database with apt-get using the following command.

sudo apt-get update

After updating apt database, We can install librostlab3 using apt-get by running the following command:

sudo apt-get -y install librostlab3

Install librostlab3 Using apt

Update apt database with apt using the following command.

sudo apt update

After updating apt database, We can install librostlab3 using apt by running the following command:

sudo apt -y install librostlab3

Install librostlab3 Using aptitude

If you want to follow this method, you might need to install aptitude first since aptitude is usually not installed by default on Debian. Update apt database with aptitude using the following command.

sudo aptitude update

After updating apt database, We can install librostlab3 using aptitude by running the following command:

sudo aptitude -y install librostlab3

How To Uninstall librostlab3 on Debian 9

To uninstall only the librostlab3 package we can use the following command:

sudo apt-get remove librostlab3

Uninstall librostlab3 And Its Dependencies

To uninstall librostlab3 and its dependencies that are no longer needed by Debian 9, we can use the command below:

sudo apt-get -y autoremove librostlab3

Remove librostlab3 Configurations and Data

To remove librostlab3 configuration and data from Debian 9 we can use the following command:

sudo apt-get -y purge librostlab3

Remove librostlab3 configuration, data, and all of its dependencies

We can use the following command to remove librostlab3 configurations, data and all of its dependencies, we can use the following command:

sudo apt-get -y autoremove --purge librostlab3

Dependencies

librostlab3 have the following dependencies:

References

Summary

In this tutorial we learn how to install librostlab3 package on Debian 9 using different package management tools: apt, apt-get and aptitude.