How To Install libopenms-dev on Debian 12
Introduction
In this tutorial we learn how to install libopenms-dev on Debian 12.
What is libopenms-dev
libopenms-dev is:
OpenMS is a library for LC/MS data management and analysis. OpenMS offers an infrastructure for the development of mass spectrometry-related software and powerful 2D and 3D visualization solutions.
OpenMS offers analyses for various quantitation protocols, including label-free quantitation, SILAC, iTRAQ, SRM, SWATH??
It provides built-in algorithms for de-novo identification and database search, as well as adapters to other state-of-the art tools like X!Tandem, Mascot, OMSSA??
OpenMS supports the Proteomics Standard Initiative (PSI) formats for MS data and supports easy integration of tools into workflow engines like Knime, Galaxy, WS-Pgrade, and TOPPAS via the TOPPtools concept and a unified parameter handling.
This package ships the library development files.
There are three methods to install libopenms-dev on Debian 12. We can use apt-get, apt and aptitude. In the following sections we will describe each method. You can choose one of them.
Install libopenms-dev Using apt-get
Update apt database with apt-get using the following command.
sudo apt-get update
After updating apt database, We can install libopenms-dev using apt-get by running the following command:
sudo apt-get -y install libopenms-dev
Install libopenms-dev Using apt
Update apt database with apt using the following command.
sudo apt update
After updating apt database, We can install libopenms-dev using apt by running the following command:
sudo apt -y install libopenms-dev
Install libopenms-dev Using aptitude
If you want to follow this method, you might need to install aptitude first since aptitude is usually not installed by default on Debian. Update apt database with aptitude using the following command.
sudo aptitude update
After updating apt database, We can install libopenms-dev using aptitude by running the following command:
sudo aptitude -y install libopenms-dev
How To Uninstall libopenms-dev on Debian 12
To uninstall only the libopenms-dev package we can use the following command:
sudo apt-get remove libopenms-dev
Uninstall libopenms-dev And Its Dependencies
To uninstall libopenms-dev and its dependencies that are no longer needed by Debian 12, we can use the command below:
sudo apt-get -y autoremove libopenms-dev
Remove libopenms-dev Configurations and Data
To remove libopenms-dev configuration and data from Debian 12 we can use the following command:
sudo apt-get -y purge libopenms-dev
Remove libopenms-dev configuration, data, and all of its dependencies
We can use the following command to remove libopenms-dev configurations, data and all of its dependencies, we can use the following command:
sudo apt-get -y autoremove --purge libopenms-dev
Dependencies
libopenms-dev have the following dependencies:
References
Summary
In this tutorial we learn how to install libopenms-dev package on Debian 12 using different package management tools: apt, apt-get and aptitude.
