How To Install libgoby-io-java on Debian 12
Introduction
In this tutorial we learn how to install libgoby-io-java on Debian 12.
What is libgoby-io-java
libgoby-io-java is:
Goby is a next-gen data management framework designed to facilitate the implementation of efficient data analysis pipelines.
Goby provides very efficient file formats to store next-generation sequencing data and intermediary analysis results.
This package contains the Goby IO API, including code necessary to read and write Goby file formats. It is released under the LGPL3 license.
There are three methods to install libgoby-io-java on Debian 12. We can use apt-get, apt and aptitude. In the following sections we will describe each method. You can choose one of them.
Install libgoby-io-java Using apt-get
Update apt database with apt-get using the following command.
sudo apt-get update
After updating apt database, We can install libgoby-io-java using apt-get by running the following command:
sudo apt-get -y install libgoby-io-java
Install libgoby-io-java Using apt
Update apt database with apt using the following command.
sudo apt update
After updating apt database, We can install libgoby-io-java using apt by running the following command:
sudo apt -y install libgoby-io-java
Install libgoby-io-java Using aptitude
If you want to follow this method, you might need to install aptitude first since aptitude is usually not installed by default on Debian. Update apt database with aptitude using the following command.
sudo aptitude update
After updating apt database, We can install libgoby-io-java using aptitude by running the following command:
sudo aptitude -y install libgoby-io-java
How To Uninstall libgoby-io-java on Debian 12
To uninstall only the libgoby-io-java package we can use the following command:
sudo apt-get remove libgoby-io-java
Uninstall libgoby-io-java And Its Dependencies
To uninstall libgoby-io-java and its dependencies that are no longer needed by Debian 12, we can use the command below:
sudo apt-get -y autoremove libgoby-io-java
Remove libgoby-io-java Configurations and Data
To remove libgoby-io-java configuration and data from Debian 12 we can use the following command:
sudo apt-get -y purge libgoby-io-java
Remove libgoby-io-java configuration, data, and all of its dependencies
We can use the following command to remove libgoby-io-java configurations, data and all of its dependencies, we can use the following command:
sudo apt-get -y autoremove --purge libgoby-io-java
Dependencies
libgoby-io-java have the following dependencies:
- libcommons-cli-java
- libcommons-configuration-java
- libcommons-exec-java
- libcommons-io-java
- libcommons-lang-java
- libcommons-logging-java
- libcommons-math-java
- libdsiutils-java
- libfastutil-java
- libguava-java
- libhtsjdk-java
- libicb-utils-java
- libjsap-java
- libprotobuf-java
- libreflections-java
- libslf4j-java
- libxstream-java
- libcommons-collections3-java
- libjbzip2-java
- libpj-java
References
Summary
In this tutorial we learn how to install libgoby-io-java package on Debian 12 using different package management tools: apt, apt-get and aptitude.
