How To Install libfastahack0 on Debian 10

Learn how to install libfastahack0 on Debian 10 with this tutorial. libfastahack0 is library for indexing and sequence extraction from FASTA files (lib)

Introduction

In this tutorial we learn how to install libfastahack0 on Debian 10.

What is libfastahack0

libfastahack0 is:

fastahack is a small application for indexing and extracting sequences and subsequences from FASTA files. The included Fasta.cpp library provides a FASTA reader and indexer that can be embedded into applications which would benefit from directly reading subsequences from FASTA files. The library automatically handles index file generation and use.

Features:

  • FASTA index (.fai) generation for FASTA files
  • Sequence extraction
  • Subsequence extraction
  • Sequence statistics (currently only entropy is provided)

Sequence and subsequence extraction use fseek64 to provide fastest-possible extraction without RAM-intensive file loading operations. This makes fastahack a useful tool for bioinformaticists who need to quickly extract many subsequences from a reference FASTA sequence.

This package contains the dynamic library.

There are three methods to install libfastahack0 on Debian 10. We can use apt-get, apt and aptitude. In the following sections we will describe each method. You can choose one of them.

Install libfastahack0 Using apt-get

Update apt database with apt-get using the following command.

sudo apt-get update

After updating apt database, We can install libfastahack0 using apt-get by running the following command:

sudo apt-get -y install libfastahack0

Install libfastahack0 Using apt

Update apt database with apt using the following command.

sudo apt update

After updating apt database, We can install libfastahack0 using apt by running the following command:

sudo apt -y install libfastahack0

Install libfastahack0 Using aptitude

If you want to follow this method, you might need to install aptitude first since aptitude is usually not installed by default on Debian. Update apt database with aptitude using the following command.

sudo aptitude update

After updating apt database, We can install libfastahack0 using aptitude by running the following command:

sudo aptitude -y install libfastahack0

How To Uninstall libfastahack0 on Debian 10

To uninstall only the libfastahack0 package we can use the following command:

sudo apt-get remove libfastahack0

Uninstall libfastahack0 And Its Dependencies

To uninstall libfastahack0 and its dependencies that are no longer needed by Debian 10, we can use the command below:

sudo apt-get -y autoremove libfastahack0

Remove libfastahack0 Configurations and Data

To remove libfastahack0 configuration and data from Debian 10 we can use the following command:

sudo apt-get -y purge libfastahack0

Remove libfastahack0 configuration, data, and all of its dependencies

We can use the following command to remove libfastahack0 configurations, data and all of its dependencies, we can use the following command:

sudo apt-get -y autoremove --purge libfastahack0

Dependencies

libfastahack0 have the following dependencies:

References

Summary

In this tutorial we learn how to install libfastahack0 package on Debian 10 using different package management tools: apt, apt-get and aptitude.