How To Install libedlib0 on Ubuntu 20.04
Introduction
In this tutorial we learn how to install libedlib0
on Ubuntu 20.04.
What is libedlib0
libedlib0 is:
A lightweight and super fast C/C++ library for sequence alignment using edit distance.
Calculating edit distance of two strings is as simple as:
edlibAlign(“hello”, 5, “world!”, 6, edlibDefaultAlignConfig()).editDistance; Features
- Calculates edit distance (Levehnstein distance).
- It can find optimal alignment path (instructions how to transform first sequence into the second sequence).
- It can find just the start and/or end locations of alignment path - can be useful when speed is more important than having exact alignment path.
- Supports multiple alignment methods: global(NW), prefix(SHW) and infix(HW), each of them useful for different scenarios.
- You can extend character equality definition, enabling you to e.g. have wildcard characters, to have case insensitive alignment or to work with degenerate nucleotides.
- It can easily handle small or very large sequences, even when finding alignment path, while consuming very little memory.
- Super fast thanks to Myers’s bit-vector algorithm.
This package contains the shared library.
There are three methods to install libedlib0
on Ubuntu 20.04. We can use apt-get
, apt
and aptitude
. In the following sections we will describe each method. You can choose one of them.
Install libedlib0 Using apt-get
Update apt database with apt-get
using the following command.
sudo apt-get update
After updating apt database, We can install libedlib0
using apt-get
by running the following command:
sudo apt-get -y install libedlib0
Install libedlib0 Using apt
Update apt database with apt
using the following command.
sudo apt update
After updating apt database, We can install libedlib0
using apt
by running the following command:
sudo apt -y install libedlib0
Install libedlib0 Using aptitude
If you want to follow this method, you might need to install aptitude first since aptitude is usually not installed by default on Ubuntu. Update apt database with aptitude
using the following command.
sudo aptitude update
After updating apt database, We can install libedlib0
using aptitude
by running the following command:
sudo aptitude -y install libedlib0
How To Uninstall libedlib0 on Ubuntu 20.04
To uninstall only the libedlib0
package we can use the following command:
sudo apt-get remove libedlib0
Uninstall libedlib0 And Its Dependencies
To uninstall libedlib0
and its dependencies that are no longer needed by Ubuntu 20.04, we can use the command below:
sudo apt-get -y autoremove libedlib0
Remove libedlib0 Configurations and Data
To remove libedlib0
configuration and data from Ubuntu 20.04 we can use the following command:
sudo apt-get -y purge libedlib0
Remove libedlib0 configuration, data, and all of its dependencies
We can use the following command to remove libedlib0
configurations, data and all of its dependencies, we can use the following command:
sudo apt-get -y autoremove --purge libedlib0
References
Summary
In this tutorial we learn how to install libedlib0
package on Ubuntu 20.04 using different package management tools: apt
, apt-get
and aptitude
.