How To Install libchado-perl on Kali Linux
Introduction
In this tutorial we learn how to install libchado-perl on Kali Linux.
What is libchado-perl
libchado-perl is:
Chado is a relational database schema that underlies many GMOD installations. It is capable of representing many of the general classes of data frequently encountered in modern biology such as sequence, sequence comparisons, phenotypes, genotypes, ontologies, publications, and phylogeny. It has been designed to handle complex representations of biological knowledge and should be considered one of the most sophisticated relational schemas currently available in molecular biology. The price of this capability is that the new user must spend some time becoming familiar with its fundamentals.
There are three methods to install libchado-perl on Kali Linux. We can use apt-get, apt and aptitude. In the following sections we will describe each method. You can choose one of them.
Install libchado-perl Using apt-get
Update apt database with apt-get using the following command.
sudo apt-get updateAfter updating apt database, We can install libchado-perl using apt-get by running the following command:
sudo apt-get -y install libchado-perlInstall libchado-perl Using apt
Update apt database with apt using the following command.
sudo apt updateAfter updating apt database, We can install libchado-perl using apt by running the following command:
sudo apt -y install libchado-perlInstall libchado-perl Using aptitude
If you want to follow this method, you might need to install aptitude on Kali Linux first since aptitude is usually not installed by default on Kali Linux. Update apt database with aptitude using the following command.
sudo aptitude updateAfter updating apt database, We can install libchado-perl using aptitude by running the following command:
sudo aptitude -y install libchado-perlHow To Uninstall libchado-perl on Kali Linux
To uninstall only the libchado-perl package we can use the following command:
sudo apt-get remove libchado-perlUninstall libchado-perl And Its Dependencies
To uninstall libchado-perl and its dependencies that are no longer needed by Kali Linux, we can use the command below:
sudo apt-get -y autoremove libchado-perlRemove libchado-perl Configurations and Data
To remove libchado-perl configuration and data from Kali Linux we can use the following command:
sudo apt-get -y purge libchado-perlRemove libchado-perl configuration, data, and all of its dependencies
We can use the following command to remove libchado-perl configurations, data and all of its dependencies, we can use the following command:
sudo apt-get -y autoremove --purge libchado-perlDependencies
libchado-perl have the following dependencies:
- perl
- postgresql-client
- libbio-chado-schema-perl
- libclass-dbi-pg-perl
- libxml-libxslt-perl
- liblog-log4perl-perl
- bioperl
- libgo-perl
- libdbd-pg-perl
- libdbi-perl
- libgd-gd2-perl
- libdigest-md5-file-perl
- libgraph-perl
- libdata-stag-perl
- libxml-perl
- libclass-dbi-perl
- libclass-dbi-pager-perl
- libxml-simple-perl
- libwww-perl
- libtemplate-perl
- libcgi-session-perl
- libsql-translator-perl
- libdbix-dbstag-perl
- libmodule-build-perl
- make
References
Summary
In this tutorial we learn how to install libchado-perl package on Kali Linux using different package management tools: apt, apt-get and aptitude.
