How To Install libchado-perl on Kali Linux

Introduction

In this tutorial we learn how to install libchado-perl on Kali Linux.

What is libchado-perl

libchado-perl is:

Chado is a relational database schema that underlies many GMOD installations. It is capable of representing many of the general classes of data frequently encountered in modern biology such as sequence, sequence comparisons, phenotypes, genotypes, ontologies, publications, and phylogeny. It has been designed to handle complex representations of biological knowledge and should be considered one of the most sophisticated relational schemas currently available in molecular biology. The price of this capability is that the new user must spend some time becoming familiar with its fundamentals.

There are three methods to install libchado-perl on Kali Linux. We can use apt-get, apt and aptitude. In the following sections we will describe each method. You can choose one of them.

Install libchado-perl Using apt-get

Update apt database with apt-get using the following command.

sudo apt-get update

After updating apt database, We can install libchado-perl using apt-get by running the following command:

sudo apt-get -y install libchado-perl

Install libchado-perl Using apt

Update apt database with apt using the following command.

sudo apt update

After updating apt database, We can install libchado-perl using apt by running the following command:

sudo apt -y install libchado-perl

Install libchado-perl Using aptitude

If you want to follow this method, you might need to install aptitude on Kali Linux first since aptitude is usually not installed by default on Kali Linux. Update apt database with aptitude using the following command.

sudo aptitude update

After updating apt database, We can install libchado-perl using aptitude by running the following command:

sudo aptitude -y install libchado-perl

How To Uninstall libchado-perl on Kali Linux

To uninstall only the libchado-perl package we can use the following command:

sudo apt-get remove libchado-perl

Uninstall libchado-perl And Its Dependencies

To uninstall libchado-perl and its dependencies that are no longer needed by Kali Linux, we can use the command below:

sudo apt-get -y autoremove libchado-perl

Remove libchado-perl Configurations and Data

To remove libchado-perl configuration and data from Kali Linux we can use the following command:

sudo apt-get -y purge libchado-perl

Remove libchado-perl configuration, data, and all of its dependencies

We can use the following command to remove libchado-perl configurations, data and all of its dependencies, we can use the following command:

sudo apt-get -y autoremove --purge libchado-perl

Dependencies

libchado-perl have the following dependencies:

• perl
• postgresql-client
• libbio-chado-schema-perl
• libclass-dbi-pg-perl
• libxml-libxslt-perl
• liblog-log4perl-perl
• bioperl
• libgo-perl
• libdbd-pg-perl
• libdbi-perl
• libgd-gd2-perl
• libdigest-md5-file-perl
• libgraph-perl
• libdata-stag-perl
• libxml-perl
• libclass-dbi-perl
• libclass-dbi-pager-perl
• libxml-simple-perl
• libwww-perl
• libtemplate-perl
• libcgi-session-perl
• libsql-translator-perl
• libdbix-dbstag-perl
• libmodule-build-perl
• make

References

• libchado-perl website

Summary

In this tutorial we learn how to install libchado-perl package on Kali Linux using different package management tools: apt, apt-get and aptitude.