How To Install libbio-db-gff-perl on Debian 11
Introduction
In this tutorial we learn how to install libbio-db-gff-perl on Debian 11.
What is libbio-db-gff-perl
libbio-db-gff-perl is:
Bio::DB::GFF provides fast indexed access to a sequence annotation database. It supports multiple database types (ACeDB, relational), and multiple schemas through a system of adaptors and aggregators.
The following operations are supported by this module:
retrieving a segment of sequence based on the ID of a landmark
retrieving the DNA from that segment
finding all annotations that overlap with the segment
finding all annotations that are completely contained within the segment
retrieving all annotations of a particular type, either within a segment, or globally
conversion from absolute to relative coordinates and back again, using any arbitrary landmark for the relative coordinates
using a sequence segment to create new segments based on relative offsets
There are three methods to install libbio-db-gff-perl on Debian 11. We can use apt-get, apt and aptitude. In the following sections we will describe each method. You can choose one of them.
Install libbio-db-gff-perl Using apt-get
Update apt database with apt-get using the following command.
sudo apt-get update
After updating apt database, We can install libbio-db-gff-perl using apt-get by running the following command:
sudo apt-get -y install libbio-db-gff-perl
Install libbio-db-gff-perl Using apt
Update apt database with apt using the following command.
sudo apt update
After updating apt database, We can install libbio-db-gff-perl using apt by running the following command:
sudo apt -y install libbio-db-gff-perl
Install libbio-db-gff-perl Using aptitude
If you want to follow this method, you might need to install aptitude first since aptitude is usually not installed by default on Debian. Update apt database with aptitude using the following command.
sudo aptitude update
After updating apt database, We can install libbio-db-gff-perl using aptitude by running the following command:
sudo aptitude -y install libbio-db-gff-perl
How To Uninstall libbio-db-gff-perl on Debian 11
To uninstall only the libbio-db-gff-perl package we can use the following command:
sudo apt-get remove libbio-db-gff-perl
Uninstall libbio-db-gff-perl And Its Dependencies
To uninstall libbio-db-gff-perl and its dependencies that are no longer needed by Debian 11, we can use the command below:
sudo apt-get -y autoremove libbio-db-gff-perl
Remove libbio-db-gff-perl Configurations and Data
To remove libbio-db-gff-perl configuration and data from Debian 11 we can use the following command:
sudo apt-get -y purge libbio-db-gff-perl
Remove libbio-db-gff-perl configuration, data, and all of its dependencies
We can use the following command to remove libbio-db-gff-perl configurations, data and all of its dependencies, we can use the following command:
sudo apt-get -y autoremove --purge libbio-db-gff-perl
Dependencies
libbio-db-gff-perl have the following dependencies:
References
Summary
In this tutorial we learn how to install libbio-db-gff-perl package on Debian 11 using different package management tools: apt, apt-get and aptitude.