How To Install liballelecount-perl on Debian 12
Introduction
In this tutorial we learn how to install liballelecount-perl on Debian 12.
What is liballelecount-perl
liballelecount-perl is:
Support code for NGS copy number algorithms. Takes a file of locations and a [cr|b]am file and generates a count of coverage of each allele [ACGT] at that location (given any filter settings).
The alleleCount package primarily exists to prevent code duplication between some other projects, specifically AscatNGS and Battenberg.
This package provided the Perl interface to alleleCounter providing Sanger::CGP::AlleleCount::Genotype.
There are three methods to install liballelecount-perl on Debian 12. We can use apt-get, apt and aptitude. In the following sections we will describe each method. You can choose one of them.
Install liballelecount-perl Using apt-get
Update apt database with apt-get using the following command.
sudo apt-get update
After updating apt database, We can install liballelecount-perl using apt-get by running the following command:
sudo apt-get -y install liballelecount-perl
Install liballelecount-perl Using apt
Update apt database with apt using the following command.
sudo apt update
After updating apt database, We can install liballelecount-perl using apt by running the following command:
sudo apt -y install liballelecount-perl
Install liballelecount-perl Using aptitude
If you want to follow this method, you might need to install aptitude first since aptitude is usually not installed by default on Debian. Update apt database with aptitude using the following command.
sudo aptitude update
After updating apt database, We can install liballelecount-perl using aptitude by running the following command:
sudo aptitude -y install liballelecount-perl
How To Uninstall liballelecount-perl on Debian 12
To uninstall only the liballelecount-perl package we can use the following command:
sudo apt-get remove liballelecount-perl
Uninstall liballelecount-perl And Its Dependencies
To uninstall liballelecount-perl and its dependencies that are no longer needed by Debian 12, we can use the command below:
sudo apt-get -y autoremove liballelecount-perl
Remove liballelecount-perl Configurations and Data
To remove liballelecount-perl configuration and data from Debian 12 we can use the following command:
sudo apt-get -y purge liballelecount-perl
Remove liballelecount-perl configuration, data, and all of its dependencies
We can use the following command to remove liballelecount-perl configurations, data and all of its dependencies, we can use the following command:
sudo apt-get -y autoremove --purge liballelecount-perl
Dependencies
liballelecount-perl have the following dependencies:
References
Summary
In this tutorial we learn how to install liballelecount-perl package on Debian 12 using different package management tools: apt, apt-get and aptitude.
