How To Install lagan on Debian 11
Introduction
In this tutorial we learn how to install lagan
on Debian 11.
What is lagan
lagan is:
Lagan takes local alignments generated by CHAOS as anchors, and limits the search area of the Needleman-Wunsch algorithm around these anchors.
Multi-LAGAN is a generalization of the pairwise algorithm to multiple sequence alignment. M-LAGAN performs progressive pairwise alignments, guided by a user-specified phylogenetic tree. Alignments are aligned to other alignments using the sum-of-pairs metric.
There are three methods to install lagan
on Debian 11. We can use apt-get
, apt
and aptitude
. In the following sections we will describe each method. You can choose one of them.
Install lagan Using apt-get
Update apt database with apt-get
using the following command.
sudo apt-get update
After updating apt database, We can install lagan
using apt-get
by running the following command:
sudo apt-get -y install lagan
Install lagan Using apt
Update apt database with apt
using the following command.
sudo apt update
After updating apt database, We can install lagan
using apt
by running the following command:
sudo apt -y install lagan
Install lagan Using aptitude
If you want to follow this method, you might need to install aptitude first since aptitude is usually not installed by default on Debian. Update apt database with aptitude
using the following command.
sudo aptitude update
After updating apt database, We can install lagan
using aptitude
by running the following command:
sudo aptitude -y install lagan
How To Uninstall lagan on Debian 11
To uninstall only the lagan
package we can use the following command:
sudo apt-get remove lagan
Uninstall lagan And Its Dependencies
To uninstall lagan
and its dependencies that are no longer needed by Debian 11, we can use the command below:
sudo apt-get -y autoremove lagan
Remove lagan Configurations and Data
To remove lagan
configuration and data from Debian 11 we can use the following command:
sudo apt-get -y purge lagan
Remove lagan configuration, data, and all of its dependencies
We can use the following command to remove lagan
configurations, data and all of its dependencies, we can use the following command:
sudo apt-get -y autoremove --purge lagan
Dependencies
lagan have the following dependencies:
References
Summary
In this tutorial we learn how to install lagan
package on Debian 11 using different package management tools: apt
, apt-get
and aptitude
.