How To Install kmer-examples on Debian 12
Introduction
In this tutorial we learn how to install kmer-examples on Debian 12.
What is kmer-examples
kmer-examples is:
The kmer package is a suite of tools for DNA sequence analysis. It provides tools for searching (ESTs, mRNAs, sequencing reads); aligning (ESTs, mRNAs, whole genomes); and a variety of analyses based on kmers.
This package contains a test data set as well as sample scripts running some test suite provided by Debian also as autopkgtest.
There are three methods to install kmer-examples on Debian 12. We can use apt-get, apt and aptitude. In the following sections we will describe each method. You can choose one of them.
Install kmer-examples Using apt-get
Update apt database with apt-get using the following command.
sudo apt-get update
After updating apt database, We can install kmer-examples using apt-get by running the following command:
sudo apt-get -y install kmer-examples
Install kmer-examples Using apt
Update apt database with apt using the following command.
sudo apt update
After updating apt database, We can install kmer-examples using apt by running the following command:
sudo apt -y install kmer-examples
Install kmer-examples Using aptitude
If you want to follow this method, you might need to install aptitude first since aptitude is usually not installed by default on Debian. Update apt database with aptitude using the following command.
sudo aptitude update
After updating apt database, We can install kmer-examples using aptitude by running the following command:
sudo aptitude -y install kmer-examples
How To Uninstall kmer-examples on Debian 12
To uninstall only the kmer-examples package we can use the following command:
sudo apt-get remove kmer-examples
Uninstall kmer-examples And Its Dependencies
To uninstall kmer-examples and its dependencies that are no longer needed by Debian 12, we can use the command below:
sudo apt-get -y autoremove kmer-examples
Remove kmer-examples Configurations and Data
To remove kmer-examples configuration and data from Debian 12 we can use the following command:
sudo apt-get -y purge kmer-examples
Remove kmer-examples configuration, data, and all of its dependencies
We can use the following command to remove kmer-examples configurations, data and all of its dependencies, we can use the following command:
sudo apt-get -y autoremove --purge kmer-examples
Dependencies
kmer-examples have the following dependencies:
References
Summary
In this tutorial we learn how to install kmer-examples package on Debian 12 using different package management tools: apt, apt-get and aptitude.
