How To Install kallisto-examples on Debian 12
Introduction
In this tutorial we learn how to install kallisto-examples on Debian 12.
What is kallisto-examples
kallisto-examples is:
Kallisto is a program for quantifying abundances of transcripts from RNA-Seq data, or more generally of target sequences using high-throughput sequencing reads. It is based on the novel idea of pseudoalignment for rapidly determining the compatibility of reads with targets, without the need for alignment. On benchmarks with standard RNA-Seq data, kallisto can quantify 30 million human reads in less than 3 minutes on a Mac desktop computer using only the read sequences and a transcriptome index that itself takes less than 10 minutes to build. Pseudoalignment of reads preserves the key information needed for quantification, and kallisto is therefore not only fast, but also as accurate than existing quantification tools. In fact, because the pseudoalignment procedure is robust to errors in the reads, in many benchmarks kallisto significantly outperforms existing tools.
This package contains usage examples which are used in autopkgtest.
There are three methods to install kallisto-examples on Debian 12. We can use apt-get, apt and aptitude. In the following sections we will describe each method. You can choose one of them.
Install kallisto-examples Using apt-get
Update apt database with apt-get using the following command.
sudo apt-get update
After updating apt database, We can install kallisto-examples using apt-get by running the following command:
sudo apt-get -y install kallisto-examples
Install kallisto-examples Using apt
Update apt database with apt using the following command.
sudo apt update
After updating apt database, We can install kallisto-examples using apt by running the following command:
sudo apt -y install kallisto-examples
Install kallisto-examples Using aptitude
If you want to follow this method, you might need to install aptitude first since aptitude is usually not installed by default on Debian. Update apt database with aptitude using the following command.
sudo aptitude update
After updating apt database, We can install kallisto-examples using aptitude by running the following command:
sudo aptitude -y install kallisto-examples
How To Uninstall kallisto-examples on Debian 12
To uninstall only the kallisto-examples package we can use the following command:
sudo apt-get remove kallisto-examples
Uninstall kallisto-examples And Its Dependencies
To uninstall kallisto-examples and its dependencies that are no longer needed by Debian 12, we can use the command below:
sudo apt-get -y autoremove kallisto-examples
Remove kallisto-examples Configurations and Data
To remove kallisto-examples configuration and data from Debian 12 we can use the following command:
sudo apt-get -y purge kallisto-examples
Remove kallisto-examples configuration, data, and all of its dependencies
We can use the following command to remove kallisto-examples configurations, data and all of its dependencies, we can use the following command:
sudo apt-get -y autoremove --purge kallisto-examples
Dependencies
kallisto-examples have the following dependencies:
References
Summary
In this tutorial we learn how to install kallisto-examples package on Debian 12 using different package management tools: apt, apt-get and aptitude.
