How To Install indelible on Ubuntu 22.04
Introduction
In this tutorial we learn how to install indelible
on Ubuntu 22.04.
What is indelible
indelible is:
INDELible is a new, portable, and flexible application for biological sequence simulation that combines many features in the same place for the first time. Using a length-dependent model of indel formation it can simulate evolution of multi-partitioned nucleotide, amino-acid, or codon data sets through the processes of insertion, deletion, and substitution in continuous time.
Nucleotide simulations may use the general unrestricted model or the general time reversible model and its derivatives, and amino-acid simulations can be conducted using fifteen different empirical rate matrices. Substitution rate heterogeneity can be modeled via the continuous and discrete gamma distributions, with or without a proportion of invariant sites. INDELible can also simulate under non-homogeneous and non-stationary conditions where evolutionary models are permitted to change across a phylogeny.
Unique among indel simulation programs, INDELible offers the ability to simulate using codon models that exhibit nonsynonymous/synonymous rate ratio heterogeneity among sites and/or lineages.
There are three methods to install indelible
on Ubuntu 22.04. We can use apt-get
, apt
and aptitude
. In the following sections we will describe each method. You can choose one of them.
Install indelible Using apt-get
Update apt database with apt-get
using the following command.
sudo apt-get update
After updating apt database, We can install indelible
using apt-get
by running the following command:
sudo apt-get -y install indelible
Install indelible Using apt
Update apt database with apt
using the following command.
sudo apt update
After updating apt database, We can install indelible
using apt
by running the following command:
sudo apt -y install indelible
Install indelible Using aptitude
If you want to follow this method, you might need to install aptitude first since aptitude is usually not installed by default on Ubuntu. Update apt database with aptitude
using the following command.
sudo aptitude update
After updating apt database, We can install indelible
using aptitude
by running the following command:
sudo aptitude -y install indelible
How To Uninstall indelible on Ubuntu 22.04
To uninstall only the indelible
package we can use the following command:
sudo apt-get remove indelible
Uninstall indelible And Its Dependencies
To uninstall indelible
and its dependencies that are no longer needed by Ubuntu 22.04, we can use the command below:
sudo apt-get -y autoremove indelible
Remove indelible Configurations and Data
To remove indelible
configuration and data from Ubuntu 22.04 we can use the following command:
sudo apt-get -y purge indelible
Remove indelible configuration, data, and all of its dependencies
We can use the following command to remove indelible
configurations, data and all of its dependencies, we can use the following command:
sudo apt-get -y autoremove --purge indelible
References
Summary
In this tutorial we learn how to install indelible
package on Ubuntu 22.04 using different package management tools: apt
, apt-get
and aptitude
.