How To Install igblast on Debian 12
Introduction
In this tutorial we learn how to install igblast on Debian 12.
What is igblast
igblast is:
IgBLAST allows users to view the matches to the germline V, D, and J genes, details at rearrangement junctions, the delineation of IG V domain framework regions, and complementarity determining regions. IgBLAST has the capability to analyse nucleotide and protein sequences, and can process sequences in batches. Furthermore, IgBLAST allows searches against the germline gene databases and other sequence databases simultaneously to minimize the chance of missing possibly the best matching germline V gene.
There are three methods to install igblast on Debian 12. We can use apt-get, apt and aptitude. In the following sections we will describe each method. You can choose one of them.
Install igblast Using apt-get
Update apt database with apt-get using the following command.
sudo apt-get update
After updating apt database, We can install igblast using apt-get by running the following command:
sudo apt-get -y install igblast
Install igblast Using apt
Update apt database with apt using the following command.
sudo apt update
After updating apt database, We can install igblast using apt by running the following command:
sudo apt -y install igblast
Install igblast Using aptitude
If you want to follow this method, you might need to install aptitude first since aptitude is usually not installed by default on Debian. Update apt database with aptitude using the following command.
sudo aptitude update
After updating apt database, We can install igblast using aptitude by running the following command:
sudo aptitude -y install igblast
How To Uninstall igblast on Debian 12
To uninstall only the igblast package we can use the following command:
sudo apt-get remove igblast
Uninstall igblast And Its Dependencies
To uninstall igblast and its dependencies that are no longer needed by Debian 12, we can use the command below:
sudo apt-get -y autoremove igblast
Remove igblast Configurations and Data
To remove igblast configuration and data from Debian 12 we can use the following command:
sudo apt-get -y purge igblast
Remove igblast configuration, data, and all of its dependencies
We can use the following command to remove igblast configurations, data and all of its dependencies, we can use the following command:
sudo apt-get -y autoremove --purge igblast
Dependencies
igblast have the following dependencies:
References
Summary
In this tutorial we learn how to install igblast package on Debian 12 using different package management tools: apt, apt-get and aptitude.
