How To Install hyphy-common on Debian 12
Introduction
In this tutorial we learn how to install hyphy-common on Debian 12.
What is hyphy-common
hyphy-common is:
HyPhy is an open-source software package for the analysis of genetic sequences using techniques in phylogenetics, molecular evolution, and machine learning. It features a complete graphical user interface (GUI) and a rich scripting language for limitless customization of analyses. Additionally, HyPhy features support for parallel computing environments (via message passing interface) and it can be compiled as a shared library and called from other programming environments such as Python or R. Continued development of HyPhy is currently supported in part by an NIGMS R01 award 1R01GM093939.
This package provides files that are common to all binary versions.
There are three methods to install hyphy-common on Debian 12. We can use apt-get, apt and aptitude. In the following sections we will describe each method. You can choose one of them.
Install hyphy-common Using apt-get
Update apt database with apt-get using the following command.
sudo apt-get update
After updating apt database, We can install hyphy-common using apt-get by running the following command:
sudo apt-get -y install hyphy-common
Install hyphy-common Using apt
Update apt database with apt using the following command.
sudo apt update
After updating apt database, We can install hyphy-common using apt by running the following command:
sudo apt -y install hyphy-common
Install hyphy-common Using aptitude
If you want to follow this method, you might need to install aptitude first since aptitude is usually not installed by default on Debian. Update apt database with aptitude using the following command.
sudo aptitude update
After updating apt database, We can install hyphy-common using aptitude by running the following command:
sudo aptitude -y install hyphy-common
How To Uninstall hyphy-common on Debian 12
To uninstall only the hyphy-common package we can use the following command:
sudo apt-get remove hyphy-common
Uninstall hyphy-common And Its Dependencies
To uninstall hyphy-common and its dependencies that are no longer needed by Debian 12, we can use the command below:
sudo apt-get -y autoremove hyphy-common
Remove hyphy-common Configurations and Data
To remove hyphy-common configuration and data from Debian 12 we can use the following command:
sudo apt-get -y purge hyphy-common
Remove hyphy-common configuration, data, and all of its dependencies
We can use the following command to remove hyphy-common configurations, data and all of its dependencies, we can use the following command:
sudo apt-get -y autoremove --purge hyphy-common
Dependencies
hyphy-common have the following dependencies:
References
Summary
In this tutorial we learn how to install hyphy-common package on Debian 12 using different package management tools: apt, apt-get and aptitude.
