How To Install hinge on Debian 11
Introduction
In this tutorial we learn how to install hinge on Debian 11.
What is hinge
hinge is:
HINGE is a genome assembler that seeks to achieve optimal repeat resolution by distinguishing repeats that can be resolved given the data from those that cannot. This is accomplished by adding ??hinges?? to reads for constructing an overlap graph where only unresolvable repeats are merged. As a result, HINGE combines the error resilience of overlap-based assemblers with repeat-resolution capabilities of de Bruijn graph assemblers.
There are three methods to install hinge on Debian 11. We can use apt-get, apt and aptitude. In the following sections we will describe each method. You can choose one of them.
Install hinge Using apt-get
Update apt database with apt-get using the following command.
sudo apt-get update
After updating apt database, We can install hinge using apt-get by running the following command:
sudo apt-get -y install hinge
Install hinge Using apt
Update apt database with apt using the following command.
sudo apt update
After updating apt database, We can install hinge using apt by running the following command:
sudo apt -y install hinge
Install hinge Using aptitude
If you want to follow this method, you might need to install aptitude first since aptitude is usually not installed by default on Debian. Update apt database with aptitude using the following command.
sudo aptitude update
After updating apt database, We can install hinge using aptitude by running the following command:
sudo aptitude -y install hinge
How To Uninstall hinge on Debian 11
To uninstall only the hinge package we can use the following command:
sudo apt-get remove hinge
Uninstall hinge And Its Dependencies
To uninstall hinge and its dependencies that are no longer needed by Debian 11, we can use the command below:
sudo apt-get -y autoremove hinge
Remove hinge Configurations and Data
To remove hinge configuration and data from Debian 11 we can use the following command:
sudo apt-get -y purge hinge
Remove hinge configuration, data, and all of its dependencies
We can use the following command to remove hinge configurations, data and all of its dependencies, we can use the following command:
sudo apt-get -y autoremove --purge hinge
Dependencies
hinge have the following dependencies:
References
Summary
In this tutorial we learn how to install hinge package on Debian 11 using different package management tools: apt, apt-get and aptitude.