How To Install hilive on Ubuntu 22.04
Introduction
In this tutorial we learn how to install hilive on Ubuntu 22.04.
What is hilive
hilive is:
HiLive is a read mapping tool that maps Illumina HiSeq (or comparable) reads to a reference genome right in the moment when they are produced. This means, read mapping is finished as soon as the sequencer is finished generating the data.
There are three methods to install hilive on Ubuntu 22.04. We can use apt-get, apt and aptitude. In the following sections we will describe each method. You can choose one of them.
Install hilive Using apt-get
Update apt database with apt-get using the following command.
sudo apt-get update
After updating apt database, We can install hilive using apt-get by running the following command:
sudo apt-get -y install hilive
Install hilive Using apt
Update apt database with apt using the following command.
sudo apt update
After updating apt database, We can install hilive using apt by running the following command:
sudo apt -y install hilive
Install hilive Using aptitude
If you want to follow this method, you might need to install aptitude first since aptitude is usually not installed by default on Ubuntu. Update apt database with aptitude using the following command.
sudo aptitude update
After updating apt database, We can install hilive using aptitude by running the following command:
sudo aptitude -y install hilive
How To Uninstall hilive on Ubuntu 22.04
To uninstall only the hilive package we can use the following command:
sudo apt-get remove hilive
Uninstall hilive And Its Dependencies
To uninstall hilive and its dependencies that are no longer needed by Ubuntu 22.04, we can use the command below:
sudo apt-get -y autoremove hilive
Remove hilive Configurations and Data
To remove hilive configuration and data from Ubuntu 22.04 we can use the following command:
sudo apt-get -y purge hilive
Remove hilive configuration, data, and all of its dependencies
We can use the following command to remove hilive configurations, data and all of its dependencies, we can use the following command:
sudo apt-get -y autoremove --purge hilive
References
Summary
In this tutorial we learn how to install hilive package on Ubuntu 22.04 using different package management tools: apt, apt-get and aptitude.