How To Install hilive on Debian 9
Introduction
In this tutorial we learn how to install hilive
on Debian 9.
What is hilive
hilive is:
HiLive is a read mapping tool that maps Illumina HiSeq (or comparable) reads to a reference genome right in the moment when they are produced. This means, read mapping is finished as soon as the sequencer is finished generating the data.
There are three methods to install hilive
on Debian 9. We can use apt-get
, apt
and aptitude
. In the following sections we will describe each method. You can choose one of them.
Install hilive Using apt-get
Update apt database with apt-get
using the following command.
sudo apt-get update
After updating apt database, We can install hilive
using apt-get
by running the following command:
sudo apt-get -y install hilive
Install hilive Using apt
Update apt database with apt
using the following command.
sudo apt update
After updating apt database, We can install hilive
using apt
by running the following command:
sudo apt -y install hilive
Install hilive Using aptitude
If you want to follow this method, you might need to install aptitude first since aptitude is usually not installed by default on Debian. Update apt database with aptitude
using the following command.
sudo aptitude update
After updating apt database, We can install hilive
using aptitude
by running the following command:
sudo aptitude -y install hilive
How To Uninstall hilive on Debian 9
To uninstall only the hilive
package we can use the following command:
sudo apt-get remove hilive
Uninstall hilive And Its Dependencies
To uninstall hilive
and its dependencies that are no longer needed by Debian 9, we can use the command below:
sudo apt-get -y autoremove hilive
Remove hilive Configurations and Data
To remove hilive
configuration and data from Debian 9 we can use the following command:
sudo apt-get -y purge hilive
Remove hilive configuration, data, and all of its dependencies
We can use the following command to remove hilive
configurations, data and all of its dependencies, we can use the following command:
sudo apt-get -y autoremove --purge hilive
Dependencies
hilive have the following dependencies:
References
Summary
In this tutorial we learn how to install hilive
package on Debian 9 using different package management tools: apt
, apt-get
and aptitude
.