How To Install goby-java on Debian 12
Introduction
In this tutorial we learn how to install goby-java on Debian 12.
What is goby-java
goby-java is:
Goby is a next-gen data management framework designed to facilitate the implementation of efficient data analysis pipelines.
Goby provides very efficient file formats to store next-generation sequencing data and intermediary analysis results.
Goby also provides utilities that implement common next-gen data computations. These utilities are designed to be relatively easy to use, yet very efficient.
This package provides the entire Goby framework, including application programs (i.e., Goby modes). It is released under the GPL3 license.
There are three methods to install goby-java on Debian 12. We can use apt-get, apt and aptitude. In the following sections we will describe each method. You can choose one of them.
Install goby-java Using apt-get
Update apt database with apt-get using the following command.
sudo apt-get update
After updating apt database, We can install goby-java using apt-get by running the following command:
sudo apt-get -y install goby-java
Install goby-java Using apt
Update apt database with apt using the following command.
sudo apt update
After updating apt database, We can install goby-java using apt by running the following command:
sudo apt -y install goby-java
Install goby-java Using aptitude
If you want to follow this method, you might need to install aptitude first since aptitude is usually not installed by default on Debian. Update apt database with aptitude using the following command.
sudo aptitude update
After updating apt database, We can install goby-java using aptitude by running the following command:
sudo aptitude -y install goby-java
How To Uninstall goby-java on Debian 12
To uninstall only the goby-java package we can use the following command:
sudo apt-get remove goby-java
Uninstall goby-java And Its Dependencies
To uninstall goby-java and its dependencies that are no longer needed by Debian 12, we can use the command below:
sudo apt-get -y autoremove goby-java
Remove goby-java Configurations and Data
To remove goby-java configuration and data from Debian 12 we can use the following command:
sudo apt-get -y purge goby-java
Remove goby-java configuration, data, and all of its dependencies
We can use the following command to remove goby-java configurations, data and all of its dependencies, we can use the following command:
sudo apt-get -y autoremove --purge goby-java
Dependencies
goby-java have the following dependencies:
References
Summary
In this tutorial we learn how to install goby-java package on Debian 12 using different package management tools: apt, apt-get and aptitude.
