How To Install giira on Debian 9
Introduction
In this tutorial we learn how to install giira
on Debian 9.
What is giira
giira is:
GIIRA is a gene prediction method that identifies potential coding regions exclusively based on the mapping of reads from an RNA-Seq experiment. It was foremost designed for prokaryotic gene prediction and is able to resolve genes within the expressed region of an operon. However, it is also applicable to eukaryotes and predicts exon intron structures as well as alternative isoforms.
There are three methods to install giira
on Debian 9. We can use apt-get
, apt
and aptitude
. In the following sections we will describe each method. You can choose one of them.
Install giira Using apt-get
Update apt database with apt-get
using the following command.
After updating apt database, We can install giira
using apt-get
by running the following command:
Install giira Using apt
Update apt database with apt
using the following command.
After updating apt database, We can install giira
using apt
by running the following command:
Install giira Using aptitude
If you want to follow this method, you might need to install aptitude first since aptitude is usually not installed by default on Debian. Update apt database with aptitude
using the following command.
After updating apt database, We can install giira
using aptitude
by running the following command:
How To Uninstall giira on Debian 9
To uninstall only the giira
package we can use the following command:
Uninstall giira And Its Dependencies
To uninstall giira
and its dependencies that are no longer needed by Debian 9, we can use the command below:
Remove giira Configurations and Data
To remove giira
configuration and data from Debian 9 we can use the following command:
Remove giira configuration, data, and all of its dependencies
We can use the following command to remove giira
configurations, data and all of its dependencies, we can use the following command:
Dependencies
giira have the following dependencies:
References
Summary
In this tutorial we learn how to install giira
package on Debian 9 using different package management tools: apt
, apt-get
and aptitude
.