How To Install genometools on Debian 12
Introduction
In this tutorial we learn how to install genometools on Debian 12.
What is genometools
genometools is:
The GenomeTools contains a collection of useful tools for biological sequence analysis and -presentation combined into a single binary.
The toolkit contains binaries for sequence and annotation handling, sequence compression, index structure generation and access, annotation visualization, and much more.
There are three methods to install genometools on Debian 12. We can use apt-get, apt and aptitude. In the following sections we will describe each method. You can choose one of them.
Install genometools Using apt-get
Update apt database with apt-get using the following command.
sudo apt-get update
After updating apt database, We can install genometools using apt-get by running the following command:
sudo apt-get -y install genometools
Install genometools Using apt
Update apt database with apt using the following command.
sudo apt update
After updating apt database, We can install genometools using apt by running the following command:
sudo apt -y install genometools
Install genometools Using aptitude
If you want to follow this method, you might need to install aptitude first since aptitude is usually not installed by default on Debian. Update apt database with aptitude using the following command.
sudo aptitude update
After updating apt database, We can install genometools using aptitude by running the following command:
sudo aptitude -y install genometools
How To Uninstall genometools on Debian 12
To uninstall only the genometools package we can use the following command:
sudo apt-get remove genometools
Uninstall genometools And Its Dependencies
To uninstall genometools and its dependencies that are no longer needed by Debian 12, we can use the command below:
sudo apt-get -y autoremove genometools
Remove genometools Configurations and Data
To remove genometools configuration and data from Debian 12 we can use the following command:
sudo apt-get -y purge genometools
Remove genometools configuration, data, and all of its dependencies
We can use the following command to remove genometools configurations, data and all of its dependencies, we can use the following command:
sudo apt-get -y autoremove --purge genometools
Dependencies
genometools have the following dependencies:
- libbz2-1.0
- libc6
- libcairo2
- libexpat1
- libglib2.0-0
- liblua5.1-0
- libpango-1.0-0
- libpangocairo-1.0-0
- libsqlite3-0
- libtre5
- lua-filesystem
- lua-lpeg
- lua-md5
- zlib1g
References
Summary
In this tutorial we learn how to install genometools package on Debian 12 using different package management tools: apt, apt-get and aptitude.