How To Install gasic-examples on Debian 12
Introduction
In this tutorial we learn how to install gasic-examples on Debian 12.
What is gasic-examples
gasic-examples is:
One goal of sequencing based metagenomic analysis is the quantitative taxonomic assessment of microbial community compositions. However, the majority of approaches either quantify at low resolution (e.g. at phylum level) or have severe problems discerning highly similar species. Yet, accurate quantification on species level is desirable in applications such as metagenomic diagnostics or community comparison. GASiC is a method to correct read alignment results for the ambiguities imposed by similarities of genomes. It has superior performance over existing methods.
This package includes some examples that can be used for testing gasic.
There are three methods to install gasic-examples on Debian 12. We can use apt-get, apt and aptitude. In the following sections we will describe each method. You can choose one of them.
Install gasic-examples Using apt-get
Update apt database with apt-get using the following command.
sudo apt-get update
After updating apt database, We can install gasic-examples using apt-get by running the following command:
sudo apt-get -y install gasic-examples
Install gasic-examples Using apt
Update apt database with apt using the following command.
sudo apt update
After updating apt database, We can install gasic-examples using apt by running the following command:
sudo apt -y install gasic-examples
Install gasic-examples Using aptitude
If you want to follow this method, you might need to install aptitude first since aptitude is usually not installed by default on Debian. Update apt database with aptitude using the following command.
sudo aptitude update
After updating apt database, We can install gasic-examples using aptitude by running the following command:
sudo aptitude -y install gasic-examples
How To Uninstall gasic-examples on Debian 12
To uninstall only the gasic-examples package we can use the following command:
sudo apt-get remove gasic-examples
Uninstall gasic-examples And Its Dependencies
To uninstall gasic-examples and its dependencies that are no longer needed by Debian 12, we can use the command below:
sudo apt-get -y autoremove gasic-examples
Remove gasic-examples Configurations and Data
To remove gasic-examples configuration and data from Debian 12 we can use the following command:
sudo apt-get -y purge gasic-examples
Remove gasic-examples configuration, data, and all of its dependencies
We can use the following command to remove gasic-examples configurations, data and all of its dependencies, we can use the following command:
sudo apt-get -y autoremove --purge gasic-examples
Dependencies
gasic-examples have the following dependencies:
References
Summary
In this tutorial we learn how to install gasic-examples package on Debian 12 using different package management tools: apt, apt-get and aptitude.