How To Install garli-mpi on Debian 12
Introduction
In this tutorial we learn how to install garli-mpi on Debian 12.
What is garli-mpi
garli-mpi is:
GARLI, Genetic Algorithm for Rapid Likelihood Inference is a program for inferring phylogenetic trees. Using an approach similar to a classical genetic algorithm, it rapidly searches the space of evolutionary trees and model parameters to find the solution maximizing the likelihood score. It implements nucleotide, amino acid and codon-based models of sequence evolution, and runs on all platforms. The latest version adds support for partitioned models and morphology-like datatypes.
This version of Garli is using MPI.
There are three methods to install garli-mpi on Debian 12. We can use apt-get, apt and aptitude. In the following sections we will describe each method. You can choose one of them.
Install garli-mpi Using apt-get
Update apt database with apt-get using the following command.
sudo apt-get update
After updating apt database, We can install garli-mpi using apt-get by running the following command:
sudo apt-get -y install garli-mpi
Install garli-mpi Using apt
Update apt database with apt using the following command.
sudo apt update
After updating apt database, We can install garli-mpi using apt by running the following command:
sudo apt -y install garli-mpi
Install garli-mpi Using aptitude
If you want to follow this method, you might need to install aptitude first since aptitude is usually not installed by default on Debian. Update apt database with aptitude using the following command.
sudo aptitude update
After updating apt database, We can install garli-mpi using aptitude by running the following command:
sudo aptitude -y install garli-mpi
How To Uninstall garli-mpi on Debian 12
To uninstall only the garli-mpi package we can use the following command:
sudo apt-get remove garli-mpi
Uninstall garli-mpi And Its Dependencies
To uninstall garli-mpi and its dependencies that are no longer needed by Debian 12, we can use the command below:
sudo apt-get -y autoremove garli-mpi
Remove garli-mpi Configurations and Data
To remove garli-mpi configuration and data from Debian 12 we can use the following command:
sudo apt-get -y purge garli-mpi
Remove garli-mpi configuration, data, and all of its dependencies
We can use the following command to remove garli-mpi configurations, data and all of its dependencies, we can use the following command:
sudo apt-get -y autoremove --purge garli-mpi
Dependencies
garli-mpi have the following dependencies:
References
Summary
In this tutorial we learn how to install garli-mpi package on Debian 12 using different package management tools: apt, apt-get and aptitude.
