How To Install embassy-domsearch on Debian 10

Learn how to install embassy-domsearch on Debian 10 with this tutorial. embassy-domsearch is Extra EMBOSS commands to search for protein domains

Introduction

In this tutorial we learn how to install embassy-domsearch on Debian 10.

What is embassy-domsearch

embassy-domsearch is:

The DOMSEARCH programs were developed by Jon Ison and colleagues at MRC HGMP for their protein domain research. They are included as an EMBASSY package as a work in progress.

Applications in this DOMSEARCH release are seqfraggle (removes fragment sequences from DHF files), seqnr (removes redundancy from DHF files), seqsearch (generates PSI-BLAST hits (DHF file) from a DAF file), seqsort (Remove ambiguous classified sequences from DHF files) and seqwords (Generates DHF files from keyword search of UniProt).

There are three methods to install embassy-domsearch on Debian 10. We can use apt-get, apt and aptitude. In the following sections we will describe each method. You can choose one of them.

Install embassy-domsearch Using apt-get

Update apt database with apt-get using the following command.

sudo apt-get update

After updating apt database, We can install embassy-domsearch using apt-get by running the following command:

sudo apt-get -y install embassy-domsearch

Install embassy-domsearch Using apt

Update apt database with apt using the following command.

sudo apt update

After updating apt database, We can install embassy-domsearch using apt by running the following command:

sudo apt -y install embassy-domsearch

Install embassy-domsearch Using aptitude

If you want to follow this method, you might need to install aptitude first since aptitude is usually not installed by default on Debian. Update apt database with aptitude using the following command.

sudo aptitude update

After updating apt database, We can install embassy-domsearch using aptitude by running the following command:

sudo aptitude -y install embassy-domsearch

How To Uninstall embassy-domsearch on Debian 10

To uninstall only the embassy-domsearch package we can use the following command:

sudo apt-get remove embassy-domsearch

Uninstall embassy-domsearch And Its Dependencies

To uninstall embassy-domsearch and its dependencies that are no longer needed by Debian 10, we can use the command below:

sudo apt-get -y autoremove embassy-domsearch

Remove embassy-domsearch Configurations and Data

To remove embassy-domsearch configuration and data from Debian 10 we can use the following command:

sudo apt-get -y purge embassy-domsearch

Remove embassy-domsearch configuration, data, and all of its dependencies

We can use the following command to remove embassy-domsearch configurations, data and all of its dependencies, we can use the following command:

sudo apt-get -y autoremove --purge embassy-domsearch

Dependencies

embassy-domsearch have the following dependencies:

References

Summary

In this tutorial we learn how to install embassy-domsearch package on Debian 10 using different package management tools: apt, apt-get and aptitude.