How To Install elph on Ubuntu 22.04
Introduction
In this tutorial we learn how to install elph
on Ubuntu 22.04.
What is elph
elph is:
ELPH (Estimated Locations of Pattern Hits) is a general-purpose Gibbs sampler for finding motifs in a set of DNA or protein sequences. The program takes as input a set containing anywhere from a few dozen to thousands of sequences, and searches through them for the most common motif, assuming that each sequence contains one copy of the motif. ELPH was used to find patterns such as ribosome binding sites (RBSs) and exon splicing enhancers (ESEs).
There are three methods to install elph
on Ubuntu 22.04. We can use apt-get
, apt
and aptitude
. In the following sections we will describe each method. You can choose one of them.
Install elph Using apt-get
Update apt database with apt-get
using the following command.
sudo apt-get update
After updating apt database, We can install elph
using apt-get
by running the following command:
sudo apt-get -y install elph
Install elph Using apt
Update apt database with apt
using the following command.
sudo apt update
After updating apt database, We can install elph
using apt
by running the following command:
sudo apt -y install elph
Install elph Using aptitude
If you want to follow this method, you might need to install aptitude first since aptitude is usually not installed by default on Ubuntu. Update apt database with aptitude
using the following command.
sudo aptitude update
After updating apt database, We can install elph
using aptitude
by running the following command:
sudo aptitude -y install elph
How To Uninstall elph on Ubuntu 22.04
To uninstall only the elph
package we can use the following command:
sudo apt-get remove elph
Uninstall elph And Its Dependencies
To uninstall elph
and its dependencies that are no longer needed by Ubuntu 22.04, we can use the command below:
sudo apt-get -y autoremove elph
Remove elph Configurations and Data
To remove elph
configuration and data from Ubuntu 22.04 we can use the following command:
sudo apt-get -y purge elph
Remove elph configuration, data, and all of its dependencies
We can use the following command to remove elph
configurations, data and all of its dependencies, we can use the following command:
sudo apt-get -y autoremove --purge elph
References
Summary
In this tutorial we learn how to install elph
package on Ubuntu 22.04 using different package management tools: apt
, apt-get
and aptitude
.