How To Install drop-seq-tools on Debian 12
Introduction
In this tutorial we learn how to install drop-seq-tools on Debian 12.
What is drop-seq-tools
drop-seq-tools is:
This software provide for core computational analysis of Drop-seq data, which shows you how to transform raw sequence data into an expression measurement for each gene in each individual cell.
There are three methods to install drop-seq-tools on Debian 12. We can use apt-get, apt and aptitude. In the following sections we will describe each method. You can choose one of them.
Install drop-seq-tools Using apt-get
Update apt database with apt-get using the following command.
sudo apt-get update
After updating apt database, We can install drop-seq-tools using apt-get by running the following command:
sudo apt-get -y install drop-seq-tools
Install drop-seq-tools Using apt
Update apt database with apt using the following command.
sudo apt update
After updating apt database, We can install drop-seq-tools using apt by running the following command:
sudo apt -y install drop-seq-tools
Install drop-seq-tools Using aptitude
If you want to follow this method, you might need to install aptitude first since aptitude is usually not installed by default on Debian. Update apt database with aptitude using the following command.
sudo aptitude update
After updating apt database, We can install drop-seq-tools using aptitude by running the following command:
sudo aptitude -y install drop-seq-tools
How To Uninstall drop-seq-tools on Debian 12
To uninstall only the drop-seq-tools package we can use the following command:
sudo apt-get remove drop-seq-tools
Uninstall drop-seq-tools And Its Dependencies
To uninstall drop-seq-tools and its dependencies that are no longer needed by Debian 12, we can use the command below:
sudo apt-get -y autoremove drop-seq-tools
Remove drop-seq-tools Configurations and Data
To remove drop-seq-tools configuration and data from Debian 12 we can use the following command:
sudo apt-get -y purge drop-seq-tools
Remove drop-seq-tools configuration, data, and all of its dependencies
We can use the following command to remove drop-seq-tools configurations, data and all of its dependencies, we can use the following command:
sudo apt-get -y autoremove --purge drop-seq-tools
Dependencies
drop-seq-tools have the following dependencies:
- libbarclay-java
- libbiojava6-java
- libcommons-collections4-java
- libcommons-io-java
- libcommons-lang-java
- libcommons-math3-java
- libgoogle-gson-java
- libguava-java
- libhtsjdk-java
- libla4j-java
- libpicard-java
- libyaml-snake-java
- default-jre
- java-wrappers
- picard-tools
References
Summary
In this tutorial we learn how to install drop-seq-tools package on Debian 12 using different package management tools: apt, apt-get and aptitude.
