How To Install deepnano on Kali Linux

In this tutorial we learn how to install deepnano on Kali Linux. deepnano is alternative basecaller for MinION reads of genomic sequences

Introduction

In this tutorial we learn how to install deepnano on Kali Linux.

What is deepnano

deepnano is:

DeepNano is alternative basecaller for Oxford Nanopore MinION reads based on deep recurrent neural networks.

Currently it works with SQK-MAP-006 and SQK-MAP-005 chemistry and as a postprocessor for Metrichor.

There are three methods to install deepnano on Kali Linux. We can use apt-get, apt and aptitude. In the following sections we will describe each method. You can choose one of them.

Install deepnano Using apt-get

Update apt database with apt-get using the following command.

sudo apt-get update

After updating apt database, We can install deepnano using apt-get by running the following command:

sudo apt-get -y install deepnano

Install deepnano Using apt

Update apt database with apt using the following command.

sudo apt update

After updating apt database, We can install deepnano using apt by running the following command:

sudo apt -y install deepnano

Install deepnano Using aptitude

If you want to follow this method, you might need to install aptitude on Kali Linux first since aptitude is usually not installed by default on Kali Linux. Update apt database with aptitude using the following command.

sudo aptitude update

After updating apt database, We can install deepnano using aptitude by running the following command:

sudo aptitude -y install deepnano

How To Uninstall deepnano on Kali Linux

To uninstall only the deepnano package we can use the following command:

sudo apt-get remove deepnano

Uninstall deepnano And Its Dependencies

To uninstall deepnano and its dependencies that are no longer needed by Kali Linux, we can use the command below:

sudo apt-get -y autoremove deepnano

Remove deepnano Configurations and Data

To remove deepnano configuration and data from Kali Linux we can use the following command:

sudo apt-get -y purge deepnano

Remove deepnano configuration, data, and all of its dependencies

We can use the following command to remove deepnano configurations, data and all of its dependencies, we can use the following command:

sudo apt-get -y autoremove --purge deepnano

Dependencies

deepnano have the following dependencies:

References

Summary

In this tutorial we learn how to install deepnano package on Kali Linux using different package management tools: apt, apt-get and aptitude.