How To Install damapper on Debian 12
Introduction
In this tutorial we learn how to install damapper on Debian 12.
What is damapper
damapper is:
Recognised as the Damapper Library, this is a long read to reference genome mapping command line tool.
For a given reference database ‘X’ and read block ‘Y’, damapper produces the single file ‘Y.X.las’. Each output file is sorted in order of the A-reads, and if a match is a chain of local alignments, then the LA’s in the chain occur in increasing order of A-coordinates.
HPC.damapper writes a UNIX shell script to the standard output that maps
every read in blocks
This package contains the damapper and HPC.damapper binaries.
There are three methods to install damapper on Debian 12. We can use apt-get, apt and aptitude. In the following sections we will describe each method. You can choose one of them.
Install damapper Using apt-get
Update apt database with apt-get using the following command.
sudo apt-get update
After updating apt database, We can install damapper using apt-get by running the following command:
sudo apt-get -y install damapper
Install damapper Using apt
Update apt database with apt using the following command.
sudo apt update
After updating apt database, We can install damapper using apt by running the following command:
sudo apt -y install damapper
Install damapper Using aptitude
If you want to follow this method, you might need to install aptitude first since aptitude is usually not installed by default on Debian. Update apt database with aptitude using the following command.
sudo aptitude update
After updating apt database, We can install damapper using aptitude by running the following command:
sudo aptitude -y install damapper
How To Uninstall damapper on Debian 12
To uninstall only the damapper package we can use the following command:
sudo apt-get remove damapper
Uninstall damapper And Its Dependencies
To uninstall damapper and its dependencies that are no longer needed by Debian 12, we can use the command below:
sudo apt-get -y autoremove damapper
Remove damapper Configurations and Data
To remove damapper configuration and data from Debian 12 we can use the following command:
sudo apt-get -y purge damapper
Remove damapper configuration, data, and all of its dependencies
We can use the following command to remove damapper configurations, data and all of its dependencies, we can use the following command:
sudo apt-get -y autoremove --purge damapper
Dependencies
damapper have the following dependencies:
References
Summary
In this tutorial we learn how to install damapper package on Debian 12 using different package management tools: apt, apt-get and aptitude.