How To Install cutesv on Ubuntu 22.04
Introduction
In this tutorial we learn how to install cutesv
on Ubuntu 22.04.
What is cutesv
cutesv is:
Long-read sequencing enables the comprehensive discovery of structural variations (SVs). However, it is still non-trivial to achieve high sensitivity and performance simultaneously due to the complex SV characteristics implied by noisy long reads.
cuteSV is a sensitive, fast and scalable long-read-based SV detection approach. cuteSV uses tailored methods to collect the signatures of various types of SVs and employs a clustering-and-refinement method to analyze the signatures to implement sensitive SV detection. Benchmarks on real Pacific Biosciences (PacBio) and Oxford Nanopore Technology (ONT) datasets demonstrate that cuteSV has better yields and scalability than state-of-the-art tools.
There are three methods to install cutesv
on Ubuntu 22.04. We can use apt-get
, apt
and aptitude
. In the following sections we will describe each method. You can choose one of them.
Install cutesv Using apt-get
Update apt database with apt-get
using the following command.
sudo apt-get update
After updating apt database, We can install cutesv
using apt-get
by running the following command:
sudo apt-get -y install cutesv
Install cutesv Using apt
Update apt database with apt
using the following command.
sudo apt update
After updating apt database, We can install cutesv
using apt
by running the following command:
sudo apt -y install cutesv
Install cutesv Using aptitude
If you want to follow this method, you might need to install aptitude first since aptitude is usually not installed by default on Ubuntu. Update apt database with aptitude
using the following command.
sudo aptitude update
After updating apt database, We can install cutesv
using aptitude
by running the following command:
sudo aptitude -y install cutesv
How To Uninstall cutesv on Ubuntu 22.04
To uninstall only the cutesv
package we can use the following command:
sudo apt-get remove cutesv
Uninstall cutesv And Its Dependencies
To uninstall cutesv
and its dependencies that are no longer needed by Ubuntu 22.04, we can use the command below:
sudo apt-get -y autoremove cutesv
Remove cutesv Configurations and Data
To remove cutesv
configuration and data from Ubuntu 22.04 we can use the following command:
sudo apt-get -y purge cutesv
Remove cutesv configuration, data, and all of its dependencies
We can use the following command to remove cutesv
configurations, data and all of its dependencies, we can use the following command:
sudo apt-get -y autoremove --purge cutesv
References
Summary
In this tutorial we learn how to install cutesv
package on Ubuntu 22.04 using different package management tools: apt
, apt-get
and aptitude
.