How To Install covtobed-examples on Ubuntu 22.04
Introduction
In this tutorial we learn how to install covtobed-examples on Ubuntu 22.04.
What is covtobed-examples
covtobed-examples is:
Reads one (or more) alignment files (sorted BAM) and prints a BED with the coverage. It will join consecutive bases with the same coverage, and can be used to only print a BED file with the regions having a specific coverage range.
This package is meant to accommodate covtobed.
There are three methods to install covtobed-examples on Ubuntu 22.04. We can use apt-get, apt and aptitude. In the following sections we will describe each method. You can choose one of them.
Install covtobed-examples Using apt-get
Update apt database with apt-get using the following command.
sudo apt-get update
After updating apt database, We can install covtobed-examples using apt-get by running the following command:
sudo apt-get -y install covtobed-examples
Install covtobed-examples Using apt
Update apt database with apt using the following command.
sudo apt update
After updating apt database, We can install covtobed-examples using apt by running the following command:
sudo apt -y install covtobed-examples
Install covtobed-examples Using aptitude
If you want to follow this method, you might need to install aptitude first since aptitude is usually not installed by default on Ubuntu. Update apt database with aptitude using the following command.
sudo aptitude update
After updating apt database, We can install covtobed-examples using aptitude by running the following command:
sudo aptitude -y install covtobed-examples
How To Uninstall covtobed-examples on Ubuntu 22.04
To uninstall only the covtobed-examples package we can use the following command:
sudo apt-get remove covtobed-examples
Uninstall covtobed-examples And Its Dependencies
To uninstall covtobed-examples and its dependencies that are no longer needed by Ubuntu 22.04, we can use the command below:
sudo apt-get -y autoremove covtobed-examples
Remove covtobed-examples Configurations and Data
To remove covtobed-examples configuration and data from Ubuntu 22.04 we can use the following command:
sudo apt-get -y purge covtobed-examples
Remove covtobed-examples configuration, data, and all of its dependencies
We can use the following command to remove covtobed-examples configurations, data and all of its dependencies, we can use the following command:
sudo apt-get -y autoremove --purge covtobed-examples
References
Summary
In this tutorial we learn how to install covtobed-examples package on Ubuntu 22.04 using different package management tools: apt, apt-get and aptitude.
