How To Install covtobed-examples on Kali Linux

Introduction

In this tutorial we learn how to install covtobed-examples on Kali Linux.

What is covtobed-examples

covtobed-examples is:

Reads one (or more) alignment files (sorted BAM) and prints a BED with the coverage. It will join consecutive bases with the same coverage, and can be used to only print a BED file with the regions having a specific coverage range.

This package is meant to accommodate covtobed.

There are three methods to install covtobed-examples on Kali Linux. We can use apt-get, apt and aptitude. In the following sections we will describe each method. You can choose one of them.

Install covtobed-examples Using apt-get

Update apt database with apt-get using the following command.

sudo apt-get update

After updating apt database, We can install covtobed-examples using apt-get by running the following command:

sudo apt-get -y install covtobed-examples

Install covtobed-examples Using apt

Update apt database with apt using the following command.

sudo apt update

After updating apt database, We can install covtobed-examples using apt by running the following command:

sudo apt -y install covtobed-examples

Install covtobed-examples Using aptitude

If you want to follow this method, you might need to install aptitude on Kali Linux first since aptitude is usually not installed by default on Kali Linux. Update apt database with aptitude using the following command.

sudo aptitude update

After updating apt database, We can install covtobed-examples using aptitude by running the following command:

sudo aptitude -y install covtobed-examples

How To Uninstall covtobed-examples on Kali Linux

To uninstall only the covtobed-examples package we can use the following command:

sudo apt-get remove covtobed-examples

Uninstall covtobed-examples And Its Dependencies

To uninstall covtobed-examples and its dependencies that are no longer needed by Kali Linux, we can use the command below:

sudo apt-get -y autoremove covtobed-examples

Remove covtobed-examples Configurations and Data

To remove covtobed-examples configuration and data from Kali Linux we can use the following command:

sudo apt-get -y purge covtobed-examples

Remove covtobed-examples configuration, data, and all of its dependencies

We can use the following command to remove covtobed-examples configurations, data and all of its dependencies, we can use the following command:

sudo apt-get -y autoremove --purge covtobed-examples

Dependencies

covtobed-examples have the following dependencies:

References

• covtobed-examples website

Summary

In this tutorial we learn how to install covtobed-examples package on Kali Linux using different package management tools: apt, apt-get and aptitude.