How To Install codonw on Debian 10
Introduction
In this tutorial we learn how to install codonw on Debian 10.
What is codonw
codonw is:
CodonW is a package for codon usage analysis. It was designed to simplify Multivariate Analysis (MVA) of codon usage. The MVA method employed in CodonW is correspondence analysis (COA) (the most popular MVA method for codon usage analysis). CodonW can generate a COA for codon usage, relative synonymous codon usage or amino acid usage. Additional analyses of codon usage include investigation of optimal codons, codon and dinucleotide bias, and/or base composition. CodonW analyses sequences encoded by genetic codes other than the universal code.
There are three methods to install codonw on Debian 10. We can use apt-get, apt and aptitude. In the following sections we will describe each method. You can choose one of them.
Install codonw Using apt-get
Update apt database with apt-get using the following command.
sudo apt-get update
After updating apt database, We can install codonw using apt-get by running the following command:
sudo apt-get -y install codonw
Install codonw Using apt
Update apt database with apt using the following command.
sudo apt update
After updating apt database, We can install codonw using apt by running the following command:
sudo apt -y install codonw
Install codonw Using aptitude
If you want to follow this method, you might need to install aptitude first since aptitude is usually not installed by default on Debian. Update apt database with aptitude using the following command.
sudo aptitude update
After updating apt database, We can install codonw using aptitude by running the following command:
sudo aptitude -y install codonw
How To Uninstall codonw on Debian 10
To uninstall only the codonw package we can use the following command:
sudo apt-get remove codonw
Uninstall codonw And Its Dependencies
To uninstall codonw and its dependencies that are no longer needed by Debian 10, we can use the command below:
sudo apt-get -y autoremove codonw
Remove codonw Configurations and Data
To remove codonw configuration and data from Debian 10 we can use the following command:
sudo apt-get -y purge codonw
Remove codonw configuration, data, and all of its dependencies
We can use the following command to remove codonw configurations, data and all of its dependencies, we can use the following command:
sudo apt-get -y autoremove --purge codonw
Dependencies
codonw have the following dependencies:
References
Summary
In this tutorial we learn how to install codonw package on Debian 10 using different package management tools: apt, apt-get and aptitude.