How To Install clearcut on Ubuntu 20.04
Introduction
In this tutorial we learn how to install clearcut
on Ubuntu 20.04.
What is clearcut
clearcut is:
Clearcut is the reference implementation for the Relaxed Neighbor Joining (RNJ) algorithm by J. Evans, L. Sheneman, and J. Foster from the Initiative for Bioinformatics and Evolutionary Studies (IBEST) at the University of Idaho.
There are three methods to install clearcut
on Ubuntu 20.04. We can use apt-get
, apt
and aptitude
. In the following sections we will describe each method. You can choose one of them.
Install clearcut Using apt-get
Update apt database with apt-get
using the following command.
sudo apt-get update
After updating apt database, We can install clearcut
using apt-get
by running the following command:
sudo apt-get -y install clearcut
Install clearcut Using apt
Update apt database with apt
using the following command.
sudo apt update
After updating apt database, We can install clearcut
using apt
by running the following command:
sudo apt -y install clearcut
Install clearcut Using aptitude
If you want to follow this method, you might need to install aptitude first since aptitude is usually not installed by default on Ubuntu. Update apt database with aptitude
using the following command.
sudo aptitude update
After updating apt database, We can install clearcut
using aptitude
by running the following command:
sudo aptitude -y install clearcut
How To Uninstall clearcut on Ubuntu 20.04
To uninstall only the clearcut
package we can use the following command:
sudo apt-get remove clearcut
Uninstall clearcut And Its Dependencies
To uninstall clearcut
and its dependencies that are no longer needed by Ubuntu 20.04, we can use the command below:
sudo apt-get -y autoremove clearcut
Remove clearcut Configurations and Data
To remove clearcut
configuration and data from Ubuntu 20.04 we can use the following command:
sudo apt-get -y purge clearcut
Remove clearcut configuration, data, and all of its dependencies
We can use the following command to remove clearcut
configurations, data and all of its dependencies, we can use the following command:
sudo apt-get -y autoremove --purge clearcut
References
Summary
In this tutorial we learn how to install clearcut
package on Ubuntu 20.04 using different package management tools: apt
, apt-get
and aptitude
.