How To Install chromimpute on Kali Linux

Introduction

In this tutorial we learn how to install chromimpute on Kali Linux.

What is chromimpute

chromimpute is:

ChromImpute takes an existing compendium of epigenomic data and uses it to predict signal tracks for mark-sample combinations not experimentally mapped or to generate a potentially more robust version of data sets that have been mapped experimentally. ChromImpute bases its predictions on features from signal tracks of other marks that have been mapped in the target sample and the target mark in other samples with these features combined using an ensemble of regression trees.

There are three methods to install chromimpute on Kali Linux. We can use apt-get, apt and aptitude. In the following sections we will describe each method. You can choose one of them.

Install chromimpute Using apt-get

Update apt database with apt-get using the following command.

sudo apt-get update

After updating apt database, We can install chromimpute using apt-get by running the following command:

sudo apt-get -y install chromimpute

Install chromimpute Using apt

Update apt database with apt using the following command.

sudo apt update

After updating apt database, We can install chromimpute using apt by running the following command:

sudo apt -y install chromimpute

Install chromimpute Using aptitude

If you want to follow this method, you might need to install aptitude on Kali Linux first since aptitude is usually not installed by default on Kali Linux. Update apt database with aptitude using the following command.

sudo aptitude update

After updating apt database, We can install chromimpute using aptitude by running the following command:

sudo aptitude -y install chromimpute

How To Uninstall chromimpute on Kali Linux

To uninstall only the chromimpute package we can use the following command:

sudo apt-get remove chromimpute

Uninstall chromimpute And Its Dependencies

To uninstall chromimpute and its dependencies that are no longer needed by Kali Linux, we can use the command below:

sudo apt-get -y autoremove chromimpute

Remove chromimpute Configurations and Data

To remove chromimpute configuration and data from Kali Linux we can use the following command:

sudo apt-get -y purge chromimpute

Remove chromimpute configuration, data, and all of its dependencies

We can use the following command to remove chromimpute configurations, data and all of its dependencies, we can use the following command:

sudo apt-get -y autoremove --purge chromimpute

Dependencies

chromimpute have the following dependencies:

• default-jre
• jarwrapper

References

• chromimpute website

Summary

In this tutorial we learn how to install chromimpute package on Kali Linux using different package management tools: apt, apt-get and aptitude.