How To Install chromhmm-example on Kali Linux

In this tutorial we learn how to install chromhmm-example on Kali Linux. chromhmm-example is Chromatin state discovery and characterization (example)

Introduction

In this tutorial we learn how to install chromhmm-example on Kali Linux.

What is chromhmm-example

ChromHMM is software for learning and characterizing chromatin states. ChromHMM can integrate multiple chromatin datasets such as ChIP-seq data of various histone modifications to discover de novo the major re-occuring combinatorial and spatial patterns of marks. ChromHMM is based on a multivariate Hidden Markov Model that explicitly models the presence or absence of each chromatin mark. The resulting model can then be used to systematically annotate a genome in one or more cell types. By automatically computing state enrichments for large-scale functional and annotation datasets ChromHMM facilitates the biological characterization of each state. ChromHMM also produces files with genome-wide maps of chromatin state annotations that can be directly visualized in a genome browser.

This package provides example to work with ChromHMM.

There are three ways to install chromhmm-example on Kali Linux . We can use apt-get, apt and aptitude. In the following sections we will describe each method. You can choose one of them.

Install chromhmm-example Using apt-get

Update apt database with apt-get using the following command.

sudo apt-get update

After updating apt database, We can install chromhmm-example using apt-get by running the following command:

sudo apt-get -y install chromhmm-example

Install chromhmm-example Using apt

Update apt database with apt using the following command.

sudo apt update

After updating apt database, We can install chromhmm-example using apt by running the following command:

sudo apt -y install chromhmm-example

Install chromhmm-example Using aptitude

If you want to follow this method, you might need to install aptitude first since aptitude is usually not installed by default on Kali Linux. Update apt database with aptitude using the following command.

sudo aptitude update

After updating apt database, We can install chromhmm-example using aptitude by running the following command:

sudo aptitude -y install chromhmm-example

How To Uninstall chromhmm-example on Kali Linux

To uninstall only the chromhmm-example package we can use the following command:

sudo apt-get remove chromhmm-example

Uninstall chromhmm-example And Its Dependencies

To uninstall chromhmm-example and its dependencies that are no longer needed by Kali Linux, we can use the command below:

sudo apt-get -y autoremove chromhmm-example

Remove chromhmm-example Configurations and Data

To remove chromhmm-example configuration and data from Kali Linux we can use the following command:

sudo apt-get -y purge chromhmm-example

Remove chromhmm-example configuration, data, and all of its dependencies

We can use the following command to remove chromhmm-example configurations, data and all of its dependencies, we can use the following command:

sudo apt-get -y autoremove --purge chromhmm-example

References

Summary

In this tutorial we learn how to install chromhmm-example using different package management tools like apt, apt-get and aptitude.