How To Install chromhmm-example on Kali Linux
Introduction
In this tutorial we learn how to install chromhmm-example
on Kali Linux.
What is chromhmm-example
chromhmm-example is:
ChromHMM is software for learning and characterizing chromatin states. ChromHMM can integrate multiple chromatin datasets such as ChIP-seq data of various histone modifications to discover de novo the major re-occuring combinatorial and spatial patterns of marks. ChromHMM is based on a multivariate Hidden Markov Model that explicitly models the presence or absence of each chromatin mark. The resulting model can then be used to systematically annotate a genome in one or more cell types. By automatically computing state enrichments for large-scale functional and annotation datasets ChromHMM facilitates the biological characterization of each state. ChromHMM also produces files with genome-wide maps of chromatin state annotations that can be directly visualized in a genome browser.
This package provides example to work with ChromHMM.
There are three methods to install chromhmm-example
on Kali Linux. We can use apt-get
, apt
and aptitude
. In the following sections we will describe each method. You can choose one of them.
Install chromhmm-example Using apt-get
Update apt database with apt-get
using the following command.
After updating apt database, We can install chromhmm-example
using apt-get
by running the following command:
Install chromhmm-example Using apt
Update apt database with apt
using the following command.
After updating apt database, We can install chromhmm-example
using apt
by running the following command:
Install chromhmm-example Using aptitude
If you want to follow this method, you might need to install aptitude on Kali Linux first since aptitude is usually not installed by default on Kali Linux. Update apt database with aptitude
using the following command.
After updating apt database, We can install chromhmm-example
using aptitude
by running the following command:
How To Uninstall chromhmm-example on Kali Linux
To uninstall only the chromhmm-example
package we can use the following command:
Uninstall chromhmm-example And Its Dependencies
To uninstall chromhmm-example
and its dependencies that are no longer needed by Kali Linux, we can use the command below:
Remove chromhmm-example Configurations and Data
To remove chromhmm-example
configuration and data from Kali Linux we can use the following command:
Remove chromhmm-example configuration, data, and all of its dependencies
We can use the following command to remove chromhmm-example
configurations, data and all of its dependencies, we can use the following command:
Dependencies
chromhmm-example have the following dependencies:
References
Summary
In this tutorial we learn how to install chromhmm-example
package on Kali Linux using different package management tools: apt
, apt-get
and aptitude
.