How To Install chromhmm-example on Debian 10
Introduction
In this tutorial we learn how to install chromhmm-example on Debian 10.
What is chromhmm-example
chromhmm-example is:
ChromHMM is software for learning and characterizing chromatin states. ChromHMM can integrate multiple chromatin datasets such as ChIP-seq data of various histone modifications to discover de novo the major re-occuring combinatorial and spatial patterns of marks. ChromHMM is based on a multivariate Hidden Markov Model that explicitly models the presence or absence of each chromatin mark. The resulting model can then be used to systematically annotate a genome in one or more cell types. By automatically computing state enrichments for large-scale functional and annotation datasets ChromHMM facilitates the biological characterization of each state. ChromHMM also produces files with genome-wide maps of chromatin state annotations that can be directly visualized in a genome browser.
This package provides example to work with ChromHMM.
There are three methods to install chromhmm-example on Debian 10. We can use apt-get, apt and aptitude. In the following sections we will describe each method. You can choose one of them.
Install chromhmm-example Using apt-get
Update apt database with apt-get using the following command.
sudo apt-get update
After updating apt database, We can install chromhmm-example using apt-get by running the following command:
sudo apt-get -y install chromhmm-example
Install chromhmm-example Using apt
Update apt database with apt using the following command.
sudo apt update
After updating apt database, We can install chromhmm-example using apt by running the following command:
sudo apt -y install chromhmm-example
Install chromhmm-example Using aptitude
If you want to follow this method, you might need to install aptitude first since aptitude is usually not installed by default on Debian. Update apt database with aptitude using the following command.
sudo aptitude update
After updating apt database, We can install chromhmm-example using aptitude by running the following command:
sudo aptitude -y install chromhmm-example
How To Uninstall chromhmm-example on Debian 10
To uninstall only the chromhmm-example package we can use the following command:
sudo apt-get remove chromhmm-example
Uninstall chromhmm-example And Its Dependencies
To uninstall chromhmm-example and its dependencies that are no longer needed by Debian 10, we can use the command below:
sudo apt-get -y autoremove chromhmm-example
Remove chromhmm-example Configurations and Data
To remove chromhmm-example configuration and data from Debian 10 we can use the following command:
sudo apt-get -y purge chromhmm-example
Remove chromhmm-example configuration, data, and all of its dependencies
We can use the following command to remove chromhmm-example configurations, data and all of its dependencies, we can use the following command:
sudo apt-get -y autoremove --purge chromhmm-example
Dependencies
chromhmm-example have the following dependencies:
References
Summary
In this tutorial we learn how to install chromhmm-example package on Debian 10 using different package management tools: apt, apt-get and aptitude.