How To Install changeo on Kali Linux
Introduction
In this tutorial we learn how to install changeo on Kali Linux.
What is changeo
Change-O is a collection of tools for processing the output of V(D)J alignment tools, assigning clonal clusters to immunoglobulin (Ig) sequences, and reconstructing germline sequences.
Dramatic improvements in high-throughput sequencing technologies now enable large-scale characterization of Ig repertoires, defined as the collection of trans-membrane antigen-receptor proteins located on the surface of B cells and T cells. Change-O is a suite of utilities to facilitate advanced analysis of Ig and TCR sequences following germline segment assignment. Change-O handles output from IMGT/HighV-QUEST and IgBLAST, and provides a wide variety of clustering methods for assigning clonal groups to Ig sequences. Record sorting, grouping, and various database manipulation operations are also included.
This package installs the library for Python 3.
There are three ways to install changeo on Kali Linux . We can use apt-get, apt and aptitude. In the following sections we will describe each method. You can choose one of them.
Install changeo Using apt-get
Update apt database with apt-get using the following command.
sudo apt-get update
After updating apt database, We can install changeo using apt-get by running the following command:
sudo apt-get -y install changeo
Install changeo Using apt
Update apt database with apt using the following command.
sudo apt update
After updating apt database, We can install changeo using apt by running the following command:
sudo apt -y install changeo
Install changeo Using aptitude
If you want to follow this method, you might need to install aptitude first since aptitude is usually not installed by default on Kali Linux. Update apt database with aptitude using the following command.
sudo aptitude update
After updating apt database, We can install changeo using aptitude by running the following command:
sudo aptitude -y install changeo
How To Uninstall changeo on Kali Linux
To uninstall only the changeo package we can use the following command:
sudo apt-get remove changeo
Uninstall changeo And Its Dependencies
To uninstall changeo and its dependencies that are no longer needed by Kali Linux, we can use the command below:
sudo apt-get -y autoremove changeo
Remove changeo Configurations and Data
To remove changeo configuration and data from Kali Linux we can use the following command:
sudo apt-get -y purge changeo
Remove changeo configuration, data, and all of its dependencies
We can use the following command to remove changeo configurations, data and all of its dependencies, we can use the following command:
sudo apt-get -y autoremove --purge changeo
References
Summary
In this tutorial we learn how to install changeo using different package management tools like apt, apt-get and aptitude.