How To Install catfishq on Debian 12
Introduction
In this tutorial we learn how to install catfishq on Debian 12.
What is catfishq
catfishq is:
FASTQ is the most common format to store the reads from high-throughput biological sequencing. This tool takes paths to an arbritary number of zipped and unzipped FASTQ files and/or folders containing zipped or unzipped FASTQ files, concatenates them and prints them to standard out (default) or an unzipped output file.
Supported file extensions are: ‘.fastq’, ‘.fastq.gz’, ‘.fasta’, ‘.fasta.gz’, ‘.fa’, ‘.fa.gz’, ‘.fq’, ‘.fq.gz’
There are three methods to install catfishq on Debian 12. We can use apt-get, apt and aptitude. In the following sections we will describe each method. You can choose one of them.
Install catfishq Using apt-get
Update apt database with apt-get using the following command.
sudo apt-get update
After updating apt database, We can install catfishq using apt-get by running the following command:
sudo apt-get -y install catfishq
Install catfishq Using apt
Update apt database with apt using the following command.
sudo apt update
After updating apt database, We can install catfishq using apt by running the following command:
sudo apt -y install catfishq
Install catfishq Using aptitude
If you want to follow this method, you might need to install aptitude first since aptitude is usually not installed by default on Debian. Update apt database with aptitude using the following command.
sudo aptitude update
After updating apt database, We can install catfishq using aptitude by running the following command:
sudo aptitude -y install catfishq
How To Uninstall catfishq on Debian 12
To uninstall only the catfishq package we can use the following command:
sudo apt-get remove catfishq
Uninstall catfishq And Its Dependencies
To uninstall catfishq and its dependencies that are no longer needed by Debian 12, we can use the command below:
sudo apt-get -y autoremove catfishq
Remove catfishq Configurations and Data
To remove catfishq configuration and data from Debian 12 we can use the following command:
sudo apt-get -y purge catfishq
Remove catfishq configuration, data, and all of its dependencies
We can use the following command to remove catfishq configurations, data and all of its dependencies, we can use the following command:
sudo apt-get -y autoremove --purge catfishq
Dependencies
catfishq have the following dependencies:
References
Summary
In this tutorial we learn how to install catfishq package on Debian 12 using different package management tools: apt, apt-get and aptitude.