How To Install busco on Debian 11
Introduction
In this tutorial we learn how to install busco on Debian 11.
What is busco
busco is:
Assessing genome assembly and annotation completeness with Benchmarking Universal Single-Copy Orthologs (BUSCO).
- Automated selection of lineages issued from https://www.orthodb.org/
- Automated download of all necessary files and datasets to conduct a run
- Use prodigal for non-eukaryotic genomes
There are three methods to install busco on Debian 11. We can use apt-get, apt and aptitude. In the following sections we will describe each method. You can choose one of them.
Install busco Using apt-get
Update apt database with apt-get using the following command.
sudo apt-get update
After updating apt database, We can install busco using apt-get by running the following command:
sudo apt-get -y install busco
Install busco Using apt
Update apt database with apt using the following command.
sudo apt update
After updating apt database, We can install busco using apt by running the following command:
sudo apt -y install busco
Install busco Using aptitude
If you want to follow this method, you might need to install aptitude first since aptitude is usually not installed by default on Debian. Update apt database with aptitude using the following command.
sudo aptitude update
After updating apt database, We can install busco using aptitude by running the following command:
sudo aptitude -y install busco
How To Uninstall busco on Debian 11
To uninstall only the busco package we can use the following command:
sudo apt-get remove busco
Uninstall busco And Its Dependencies
To uninstall busco and its dependencies that are no longer needed by Debian 11, we can use the command below:
sudo apt-get -y autoremove busco
Remove busco Configurations and Data
To remove busco configuration and data from Debian 11 we can use the following command:
sudo apt-get -y purge busco
Remove busco configuration, data, and all of its dependencies
We can use the following command to remove busco configurations, data and all of its dependencies, we can use the following command:
sudo apt-get -y autoremove --purge busco
Dependencies
busco have the following dependencies:
References
Summary
In this tutorial we learn how to install busco package on Debian 11 using different package management tools: apt, apt-get and aptitude.