How To Install bioperl-run on Ubuntu 22.04

In this tutorial we learn how to install bioperl-run on Ubuntu 22.04. bioperl-run is BioPerl wrappers

Introduction

In this tutorial we learn how to install bioperl-run on Ubuntu 22.04.

What is bioperl-run

bioperl-run is:

Contains scripts from the BioPerl-Run package. This package will also install all wrappable applications packaged in Debian. The ones that are not Free are “Suggested” by this package.

There are three methods to install bioperl-run on Ubuntu 22.04. We can use apt-get, apt and aptitude. In the following sections we will describe each method. You can choose one of them.

Install bioperl-run Using apt-get

Update apt database with apt-get using the following command.

sudo apt-get update

After updating apt database, We can install bioperl-run using apt-get by running the following command:

sudo apt-get -y install bioperl-run

Install bioperl-run Using apt

Update apt database with apt using the following command.

sudo apt update

After updating apt database, We can install bioperl-run using apt by running the following command:

sudo apt -y install bioperl-run

Install bioperl-run Using aptitude

If you want to follow this method, you might need to install aptitude first since aptitude is usually not installed by default on Ubuntu. Update apt database with aptitude using the following command.

sudo aptitude update

After updating apt database, We can install bioperl-run using aptitude by running the following command:

sudo aptitude -y install bioperl-run

How To Uninstall bioperl-run on Ubuntu 22.04

To uninstall only the bioperl-run package we can use the following command:

sudo apt-get remove bioperl-run

Uninstall bioperl-run And Its Dependencies

To uninstall bioperl-run and its dependencies that are no longer needed by Ubuntu 22.04, we can use the command below:

sudo apt-get -y autoremove bioperl-run

Remove bioperl-run Configurations and Data

To remove bioperl-run configuration and data from Ubuntu 22.04 we can use the following command:

sudo apt-get -y purge bioperl-run

Remove bioperl-run configuration, data, and all of its dependencies

We can use the following command to remove bioperl-run configurations, data and all of its dependencies, we can use the following command:

sudo apt-get -y autoremove --purge bioperl-run

References

Summary

In this tutorial we learn how to install bioperl-run package on Ubuntu 22.04 using different package management tools: apt, apt-get and aptitude.