How To Install bioperl-run on Debian 12
Introduction
In this tutorial we learn how to install bioperl-run on Debian 12.
What is bioperl-run
bioperl-run is:
Contains scripts from the BioPerl-Run package. This package will also install all wrappable applications packaged in Debian. The ones that are not Free are “Suggested” by this package.
There are three methods to install bioperl-run on Debian 12. We can use apt-get, apt and aptitude. In the following sections we will describe each method. You can choose one of them.
Install bioperl-run Using apt-get
Update apt database with apt-get using the following command.
sudo apt-get update
After updating apt database, We can install bioperl-run using apt-get by running the following command:
sudo apt-get -y install bioperl-run
Install bioperl-run Using apt
Update apt database with apt using the following command.
sudo apt update
After updating apt database, We can install bioperl-run using apt by running the following command:
sudo apt -y install bioperl-run
Install bioperl-run Using aptitude
If you want to follow this method, you might need to install aptitude first since aptitude is usually not installed by default on Debian. Update apt database with aptitude using the following command.
sudo aptitude update
After updating apt database, We can install bioperl-run using aptitude by running the following command:
sudo aptitude -y install bioperl-run
How To Uninstall bioperl-run on Debian 12
To uninstall only the bioperl-run package we can use the following command:
sudo apt-get remove bioperl-run
Uninstall bioperl-run And Its Dependencies
To uninstall bioperl-run and its dependencies that are no longer needed by Debian 12, we can use the command below:
sudo apt-get -y autoremove bioperl-run
Remove bioperl-run Configurations and Data
To remove bioperl-run configuration and data from Debian 12 we can use the following command:
sudo apt-get -y purge bioperl-run
Remove bioperl-run configuration, data, and all of its dependencies
We can use the following command to remove bioperl-run configurations, data and all of its dependencies, we can use the following command:
sudo apt-get -y autoremove --purge bioperl-run
Dependencies
bioperl-run have the following dependencies:
References
Summary
In this tutorial we learn how to install bioperl-run package on Debian 12 using different package management tools: apt, apt-get and aptitude.