How To Install bio-eagle-examples on Debian 10
Introduction
In this tutorial we learn how to install bio-eagle-examples
on Debian 10.
What is bio-eagle-examples
bio-eagle-examples is:
Eagle estimates haplotype phase either within a genotyped cohort or using a phased reference panel. The basic idea of the Eagle1 algorithm is to harness identity-by-descent among distant relatives??which is pervasive at very large sample sizes but rare among smaller numbers of samples??to rapidly call phase using a fast scoring approach. In contrast, the Eagle2 algorithm analyzes a full probabilistic model similar to the diploid Li-Stephens model used by previous HMM-based methods.
This package provides some example data for eagle.
There are three methods to install bio-eagle-examples
on Debian 10. We can use apt-get
, apt
and aptitude
. In the following sections we will describe each method. You can choose one of them.
Install bio-eagle-examples Using apt-get
Update apt database with apt-get
using the following command.
sudo apt-get update
After updating apt database, We can install bio-eagle-examples
using apt-get
by running the following command:
sudo apt-get -y install bio-eagle-examples
Install bio-eagle-examples Using apt
Update apt database with apt
using the following command.
sudo apt update
After updating apt database, We can install bio-eagle-examples
using apt
by running the following command:
sudo apt -y install bio-eagle-examples
Install bio-eagle-examples Using aptitude
If you want to follow this method, you might need to install aptitude first since aptitude is usually not installed by default on Debian. Update apt database with aptitude
using the following command.
sudo aptitude update
After updating apt database, We can install bio-eagle-examples
using aptitude
by running the following command:
sudo aptitude -y install bio-eagle-examples
How To Uninstall bio-eagle-examples on Debian 10
To uninstall only the bio-eagle-examples
package we can use the following command:
sudo apt-get remove bio-eagle-examples
Uninstall bio-eagle-examples And Its Dependencies
To uninstall bio-eagle-examples
and its dependencies that are no longer needed by Debian 10, we can use the command below:
sudo apt-get -y autoremove bio-eagle-examples
Remove bio-eagle-examples Configurations and Data
To remove bio-eagle-examples
configuration and data from Debian 10 we can use the following command:
sudo apt-get -y purge bio-eagle-examples
Remove bio-eagle-examples configuration, data, and all of its dependencies
We can use the following command to remove bio-eagle-examples
configurations, data and all of its dependencies, we can use the following command:
sudo apt-get -y autoremove --purge bio-eagle-examples
Dependencies
bio-eagle-examples have the following dependencies:
References
Summary
In this tutorial we learn how to install bio-eagle-examples
package on Debian 10 using different package management tools: apt
, apt-get
and aptitude
.