How To Install ataqv on Kali Linux

In this tutorial we learn how to install ataqv on Kali Linux. ataqv is ATAC-seq QC and visualization

Introduction

In this tutorial we learn how to install ataqv on Kali Linux.

What is ataqv

ataqv is:

A toolkit for measuring and comparing ATAC-seq results, made in the Parker lab at the University of Michigan. They wrote it to help understand how well their ATAC-seq assays had worked, and to make it easier to spot differences that might be caused by library prep or sequencing.

There are three methods to install ataqv on Kali Linux. We can use apt-get, apt and aptitude. In the following sections we will describe each method. You can choose one of them.

Install ataqv Using apt-get

Update apt database with apt-get using the following command.

sudo apt-get update

After updating apt database, We can install ataqv using apt-get by running the following command:

sudo apt-get -y install ataqv

Install ataqv Using apt

Update apt database with apt using the following command.

sudo apt update

After updating apt database, We can install ataqv using apt by running the following command:

sudo apt -y install ataqv

Install ataqv Using aptitude

If you want to follow this method, you might need to install aptitude on Kali Linux first since aptitude is usually not installed by default on Kali Linux. Update apt database with aptitude using the following command.

sudo aptitude update

After updating apt database, We can install ataqv using aptitude by running the following command:

sudo aptitude -y install ataqv

How To Uninstall ataqv on Kali Linux

To uninstall only the ataqv package we can use the following command:

sudo apt-get remove ataqv

Uninstall ataqv And Its Dependencies

To uninstall ataqv and its dependencies that are no longer needed by Kali Linux, we can use the command below:

sudo apt-get -y autoremove ataqv

Remove ataqv Configurations and Data

To remove ataqv configuration and data from Kali Linux we can use the following command:

sudo apt-get -y purge ataqv

Remove ataqv configuration, data, and all of its dependencies

We can use the following command to remove ataqv configurations, data and all of its dependencies, we can use the following command:

sudo apt-get -y autoremove --purge ataqv

Dependencies

ataqv have the following dependencies:

References

Summary

In this tutorial we learn how to install ataqv package on Kali Linux using different package management tools: apt, apt-get and aptitude.