How To Install ataqv on Debian 11
Introduction
In this tutorial we learn how to install ataqv on Debian 11.
What is ataqv
ataqv is:
A toolkit for measuring and comparing ATAC-seq results, made in the Parker lab at the University of Michigan. They wrote it to help understand how well their ATAC-seq assays had worked, and to make it easier to spot differences that might be caused by library prep or sequencing.
There are three methods to install ataqv on Debian 11. We can use apt-get, apt and aptitude. In the following sections we will describe each method. You can choose one of them.
Install ataqv Using apt-get
Update apt database with apt-get using the following command.
sudo apt-get update
After updating apt database, We can install ataqv using apt-get by running the following command:
sudo apt-get -y install ataqv
Install ataqv Using apt
Update apt database with apt using the following command.
sudo apt update
After updating apt database, We can install ataqv using apt by running the following command:
sudo apt -y install ataqv
Install ataqv Using aptitude
If you want to follow this method, you might need to install aptitude first since aptitude is usually not installed by default on Debian. Update apt database with aptitude using the following command.
sudo aptitude update
After updating apt database, We can install ataqv using aptitude by running the following command:
sudo aptitude -y install ataqv
How To Uninstall ataqv on Debian 11
To uninstall only the ataqv package we can use the following command:
sudo apt-get remove ataqv
Uninstall ataqv And Its Dependencies
To uninstall ataqv and its dependencies that are no longer needed by Debian 11, we can use the command below:
sudo apt-get -y autoremove ataqv
Remove ataqv Configurations and Data
To remove ataqv configuration and data from Debian 11 we can use the following command:
sudo apt-get -y purge ataqv
Remove ataqv configuration, data, and all of its dependencies
We can use the following command to remove ataqv configurations, data and all of its dependencies, we can use the following command:
sudo apt-get -y autoremove --purge ataqv
Dependencies
ataqv have the following dependencies:
- libboost-chrono1.74.0
- libboost-filesystem1.74.0
- libboost-iostreams1.74.0
- libc6
- libgcc-s1
- libhts3
- libncurses6
- libstdc++6
- libjs-jquery
- libjs-jquery-datatables
- libjs-jquery-datatables-extensions
- fonts-font-awesome
- node-normalize.css
- python3
- node-d3
References
Summary
In this tutorial we learn how to install ataqv package on Debian 11 using different package management tools: apt, apt-get and aptitude.