How To Install assemblytics on Debian 10
Introduction
In this tutorial we learn how to install assemblytics on Debian 10.
What is assemblytics
assemblytics is:
Assemblytics incorporates a unique anchor filtering approach to increase robustness to repetitive elements, and identifies six classes of variants based on their distinct alignment signatures. Assemblytics can be applied both to comparing aberrant genomes, such as human cancers, to a reference, or to identify differences between related species.
There are three methods to install assemblytics on Debian 10. We can use apt-get, apt and aptitude. In the following sections we will describe each method. You can choose one of them.
Install assemblytics Using apt-get
Update apt database with apt-get using the following command.
sudo apt-get update
After updating apt database, We can install assemblytics using apt-get by running the following command:
sudo apt-get -y install assemblytics
Install assemblytics Using apt
Update apt database with apt using the following command.
sudo apt update
After updating apt database, We can install assemblytics using apt by running the following command:
sudo apt -y install assemblytics
Install assemblytics Using aptitude
If you want to follow this method, you might need to install aptitude first since aptitude is usually not installed by default on Debian. Update apt database with aptitude using the following command.
sudo aptitude update
After updating apt database, We can install assemblytics using aptitude by running the following command:
sudo aptitude -y install assemblytics
How To Uninstall assemblytics on Debian 10
To uninstall only the assemblytics package we can use the following command:
sudo apt-get remove assemblytics
Uninstall assemblytics And Its Dependencies
To uninstall assemblytics and its dependencies that are no longer needed by Debian 10, we can use the command below:
sudo apt-get -y autoremove assemblytics
Remove assemblytics Configurations and Data
To remove assemblytics configuration and data from Debian 10 we can use the following command:
sudo apt-get -y purge assemblytics
Remove assemblytics configuration, data, and all of its dependencies
We can use the following command to remove assemblytics configurations, data and all of its dependencies, we can use the following command:
sudo apt-get -y autoremove --purge assemblytics
Dependencies
assemblytics have the following dependencies:
References
Summary
In this tutorial we learn how to install assemblytics package on Debian 10 using different package management tools: apt, apt-get and aptitude.