How To Install artemis on Kali Linux
Introduction
In this tutorial we learn how to install artemis on Kali Linux.
What is artemis
artemis is:
Artemis is a genome browser and annotation tool that allows visualisation of sequence features, next generation data and the results of analyses within the context of the sequence, and also its six-frame translation.
This package includes the Artemis genome browser, the Artemis Comparison Tool (ACT), and the DNAplotter and BamView utilities.
There are three methods to install artemis on Kali Linux. We can use apt-get, apt and aptitude. In the following sections we will describe each method. You can choose one of them.
Install artemis Using apt-get
Update apt database with apt-get using the following command.
sudo apt-get updateAfter updating apt database, We can install artemis using apt-get by running the following command:
sudo apt-get -y install artemisInstall artemis Using apt
Update apt database with apt using the following command.
sudo apt updateAfter updating apt database, We can install artemis using apt by running the following command:
sudo apt -y install artemisInstall artemis Using aptitude
If you want to follow this method, you might need to install aptitude on Kali Linux first since aptitude is usually not installed by default on Kali Linux. Update apt database with aptitude using the following command.
sudo aptitude updateAfter updating apt database, We can install artemis using aptitude by running the following command:
sudo aptitude -y install artemisHow To Uninstall artemis on Kali Linux
To uninstall only the artemis package we can use the following command:
sudo apt-get remove artemisUninstall artemis And Its Dependencies
To uninstall artemis and its dependencies that are no longer needed by Kali Linux, we can use the command below:
sudo apt-get -y autoremove artemisRemove artemis Configurations and Data
To remove artemis configuration and data from Kali Linux we can use the following command:
sudo apt-get -y purge artemisRemove artemis configuration, data, and all of its dependencies
We can use the following command to remove artemis configurations, data and all of its dependencies, we can use the following command:
sudo apt-get -y autoremove --purge artemisDependencies
artemis have the following dependencies:
- libbiojava-java
- libhtsjdk-java
- libcommons-net-java
- libcommons-lang3-java
- libcommons-logging-java
- libbatik-java
- libj2ssh-java
- libibatis-java
- liblog4j1.2-java
- libpostgresql-jdbc-java
- libpicard-java
- jemboss
- libcglib-java
- default-jre
- jarwrapper
References
Summary
In this tutorial we learn how to install artemis package on Kali Linux using different package management tools: apt, apt-get and aptitude.