How To Install ampliconnoise on Kali Linux

Introduction

In this tutorial we learn how to install ampliconnoise on Kali Linux.

What is ampliconnoise

ampliconnoise is:

AmpliconNoise is a package of applications to clean up high-throughput sequence data. It consists of three main parts:

Pyronoise - does flowgram-based clustering to spot misreads SeqNoise - removes PCR point mutations Perseus - removes PCR chimeras without the need for a set of reference sequences

Previously there was a standalone “Pyronoise” by the same authors and this package includes an updated version. There is also a “Denoiser” in Qiime which is related but distinct.

There are three methods to install ampliconnoise on Kali Linux. We can use apt-get, apt and aptitude. In the following sections we will describe each method. You can choose one of them.

Install ampliconnoise Using apt-get

Update apt database with apt-get using the following command.

sudo apt-get update

After updating apt database, We can install ampliconnoise using apt-get by running the following command:

sudo apt-get -y install ampliconnoise

Install ampliconnoise Using apt

Update apt database with apt using the following command.

sudo apt update

After updating apt database, We can install ampliconnoise using apt by running the following command:

sudo apt -y install ampliconnoise

Install ampliconnoise Using aptitude

If you want to follow this method, you might need to install aptitude on Kali Linux first since aptitude is usually not installed by default on Kali Linux. Update apt database with aptitude using the following command.

sudo aptitude update

After updating apt database, We can install ampliconnoise using aptitude by running the following command:

sudo aptitude -y install ampliconnoise

How To Uninstall ampliconnoise on Kali Linux

To uninstall only the ampliconnoise package we can use the following command:

sudo apt-get remove ampliconnoise

Uninstall ampliconnoise And Its Dependencies

To uninstall ampliconnoise and its dependencies that are no longer needed by Kali Linux, we can use the command below:

sudo apt-get -y autoremove ampliconnoise

Remove ampliconnoise Configurations and Data

To remove ampliconnoise configuration and data from Kali Linux we can use the following command:

sudo apt-get -y purge ampliconnoise

Remove ampliconnoise configuration, data, and all of its dependencies

We can use the following command to remove ampliconnoise configurations, data and all of its dependencies, we can use the following command:

sudo apt-get -y autoremove --purge ampliconnoise

Dependencies

ampliconnoise have the following dependencies:

• libc6
• libgsl25
• libopenmpi3
• mafft

References

• ampliconnoise website

Summary

In this tutorial we learn how to install ampliconnoise package on Kali Linux using different package management tools: apt, apt-get and aptitude.