How To Install snakemake on Fedora 36
In this tutorial we learn how to install snakemake in Fedora 36. snakemake is Workflow management system to create reproducible and scalable data analyses
Introduction
In this tutorial we learn how to install snakemake on Fedora 36.
What is snakemake
The Snakemake workflow management system is a tool to create reproducible and scalable data analyses. Workflows are described via a human readable, Python based language. They can be seamlessly scaled to server, cluster, grid and cloud environments, without the need to modify the workflow definition. Finally, Snakemake workflows can entail a description of required software, which will be automatically deployed to any execution environment.
We can use yum or dnf to install snakemake on Fedora 36. In this tutorial we discuss both methods but you only need to choose one of method to install snakemake.
Install snakemake on Fedora 36 Using dnf
Update yum database with dnf using the following command.
sudo dnf makecache --refresh
After updating yum database, We can install snakemake using dnf by running the following command:
sudo dnf -y install snakemake
Install snakemake on Fedora 36 Using yum
Update yum database with yum using the following command.
sudo yum makecache --refresh
After updating yum database, We can install snakemake using yum by running the following command:
sudo yum -y install snakemake
How To Uninstall snakemake on Fedora 36
To uninstall only the snakemake package we can use the following command:
sudo dnf remove snakemake
snakemake Package Contents on Fedora 36
/usr/bin/snakemake
/usr/bin/snakemake-bash-completion
/usr/lib/python3.10/site-packages/snakemake
/usr/lib/python3.10/site-packages/snakemake-6.13.1.dist-info
/usr/lib/python3.10/site-packages/snakemake-6.13.1.dist-info/AUTHORS.rst
/usr/lib/python3.10/site-packages/snakemake-6.13.1.dist-info/INSTALLER
/usr/lib/python3.10/site-packages/snakemake-6.13.1.dist-info/LICENSE.md
/usr/lib/python3.10/site-packages/snakemake-6.13.1.dist-info/METADATA
/usr/lib/python3.10/site-packages/snakemake-6.13.1.dist-info/WHEEL
/usr/lib/python3.10/site-packages/snakemake-6.13.1.dist-info/entry_points.txt
/usr/lib/python3.10/site-packages/snakemake-6.13.1.dist-info/top_level.txt
/usr/lib/python3.10/site-packages/snakemake/__init__.py
/usr/lib/python3.10/site-packages/snakemake/__main__.py
/usr/lib/python3.10/site-packages/snakemake/__pycache__
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/usr/lib/python3.10/site-packages/snakemake/unit_tests/templates
/usr/lib/python3.10/site-packages/snakemake/unit_tests/templates/__init__.py
/usr/lib/python3.10/site-packages/snakemake/unit_tests/templates/__pycache__
/usr/lib/python3.10/site-packages/snakemake/unit_tests/templates/__pycache__/__init__.cpython-310.opt-1.pyc
/usr/lib/python3.10/site-packages/snakemake/unit_tests/templates/__pycache__/__init__.cpython-310.pyc
/usr/lib/python3.10/site-packages/snakemake/unit_tests/templates/common.py.jinja2
/usr/lib/python3.10/site-packages/snakemake/unit_tests/templates/ruletest.py.jinja2
/usr/lib/python3.10/site-packages/snakemake/utils.py
/usr/lib/python3.10/site-packages/snakemake/workflow.py
/usr/lib/python3.10/site-packages/snakemake/wrapper.py
/usr/share/doc/snakemake
/usr/share/doc/snakemake/README.md
References
Summary
In this tutorial we learn how to install snakemake on Fedora 36 using yum and [dnf]((/fedora/36/dnf/).